Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,994,998 – 15,995,097 |
Length | 99 |
Max. P | 0.887625 |
Location | 15,994,998 – 15,995,097 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 65.88 |
Mean single sequence MFE | -28.75 |
Consensus MFE | -17.12 |
Energy contribution | -18.25 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.13 |
Mean z-score | -1.42 |
Structure conservation index | 0.60 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15994998 99 - 27905053 AUUUUAGGUUAGGCUAAUGCCGCUGCCGCUGCC---------------GCUUCUGUCGACGUCGACGUCAGCGGGCAGAUAUAGAUUUGCCCGAUGCCAAAAUCGCCCGAAAUA ((((..(((..(((....)))((((.(((....---------------))....((((....))))).))))((((((((....))))))))(((......))))))..)))). ( -35.40) >DroSim_CAF1 89086 99 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNACGUCGACGUCAGCGGGCAGAUAUAGAUUUGCCCGAUGCCAAAAUCGCCCGAAAUA .................................---------------..........(((....)))..((((((((((....))))))))(((......)))))........ ( -15.90) >DroYak_CAF1 120739 99 - 1 AUUUUAGGUUAGGCUAAUGCCGCUGCUGCUGCU---------------ACCUCUGUCGACGUCGACGUCAACGGGCAGAUAUAGACUUGCCCGAUGCCAAAAUCGCCCGAAAUA ((((..(((..(((....)))((.((....)).---------------.........((((....))))..(((((((........)))))))..)).......)))..)))). ( -28.70) >DroAna_CAF1 79721 114 - 1 UUUUUAGGUUAGGCUAAUGCCUCUGCCGCUGCCACUGCCAGCGUCGUCGUCGUCGUCGACUUCAACGUCAGCGGGCAGAUAUAGAUUCGUUCGAUGCCAAAAUCGCCCAAAAUA ......(((.((((....))))..))).(((((...((..((((.(..((((....))))..).))))..)).)))))..........(..((((......))))..)...... ( -35.00) >consensus AUUUUAGGUUAGGCUAAUGCCGCUGCCGCUGCC_______________GCCUCUGUCGACGUCGACGUCAGCGGGCAGAUAUAGAUUUGCCCGAUGCCAAAAUCGCCCGAAAUA ......(((..(((....)))...)))..............................((((....)))).((((((((((....))))))))(((......)))))........ (-17.12 = -18.25 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:38 2006