Locus 6098

Sequence ID 3R_DroMel_CAF1
Location 15,994,808 – 15,994,905
Length 97
Max. P 0.928548
window9944

overview

Window 4

Location 15,994,808 – 15,994,905
Length 97
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 80.98
Mean single sequence MFE -26.56
Consensus MFE -14.30
Energy contribution -15.38
Covariance contribution 1.08
Combinations/Pair 1.15
Mean z-score -2.53
Structure conservation index 0.54
SVM decision value 1.19
SVM RNA-class probability 0.928548
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15994808 97 - 27905053
AAAGUGGAGGGAAAUAAAAAAAAAGAUUGAGAAUUAUCUCAGACAGAAGUGUG--------------CCAGAUAUCUGGUAUUGAAGUCGUUUCCCUUUCGCUUUCAUGG-----U
(((((((((((((((............(((((....)))))(((......(((--------------((((....)))))))....)))))))))).)))))))).....-----. ( -32.70)
>DroSim_CAF1 88902 96 - 1
AAAGUGGAGGGAAAUAAAA-AAAAGAUUGAGAAUUAUCUCAGACAGAAGUGUG--------------CCAGAUAUCUGGUAUUGAAGUCGUUUCCCUUUCGCUUUCAUGG-----U
(((((((((((((((....-.......(((((....)))))(((......(((--------------((((....)))))))....)))))))))).)))))))).....-----. ( -32.70)
>DroEre_CAF1 87601 94 - 1
AGAGUAGAGGGAAAUAAAA--AAAGAUUGAAAAUUAUCUCAGACAGAAGUGUG--------------CCAGAUAUC-GGUAUUGAAGUCGUUUCCCUUUCGCUUUCAUGG-----C
(((((((((((((((....--..((((........))))..(((......(((--------------((.......-)))))....))))))))))))).))))).....-----. ( -22.90)
>DroYak_CAF1 120556 94 - 1
AGAGUAGGGGGAAAUAAAA--AAAGAUUGAAAAUUAUCUCAGACAGAAGUGUG--------------CCAGAUAUC-GGUAUUGAAGUCGUUUCCCUUUCGCUUUCAUGG-----U
(((((((((((((((....--..((((........))))..(((......(((--------------((.......-)))))....))))))))))))).))))).....-----. ( -22.10)
>DroAna_CAF1 79524 108 - 1
AAAGCGGA---AAAUA-----AAAUACUGAAACGAAUCGCAGACAGAAGUGUGCCUAGUGCCAGUUGCCAAAUAUCUGUUAUUGAAGUCGAUUCCCUUUCGCUUUCUGGCUUCUGA
....((((---(....-----....((((..((.....(((.((....)).)))...))..)))).((((((((.....))))((((.(((.......))).))))))))))))). ( -22.40)
>consensus
AAAGUGGAGGGAAAUAAAA__AAAGAUUGAAAAUUAUCUCAGACAGAAGUGUG______________CCAGAUAUCUGGUAUUGAAGUCGUUUCCCUUUCGCUUUCAUGG_____U
(((((((((((((((...........((((........)))).((((.((.((...............)).)).))))...........))))))).))))))))........... (-14.30 = -15.38 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:37 2006