Locus 6097

Sequence ID 3R_DroMel_CAF1
Location 15,993,870 – 15,993,966
Length 96
Max. P 0.723639
window9943

overview

Window 3

Location 15,993,870 – 15,993,966
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 89.09
Mean single sequence MFE -20.62
Consensus MFE -18.14
Energy contribution -17.98
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.41
Structure conservation index 0.88
SVM decision value 0.41
SVM RNA-class probability 0.723639
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15993870 96 + 27905053
CUCACACCAACACGCACGUUCUGUUCUGACACUGAGCUCCGAGUUGCUCAAUUAAUUUUGAUUGCAGCCUUGGCAGCUGUUUUUGCUUU--UACCCUA
.............(((.((((......)).))..(((((((((((((((((......))))..)))).))))).)))).....)))...--....... ( -19.90)
>DroSim_CAF1 87944 96 + 1
CUCACACCAACACGCACGUUCUGUUCUGACACUGAGCUCCGAGUUGCUCAAUUAAUUUUGAUUGCAGCCUUGGCAGCUGUUUUUGCUUU--UCCCCUA
.............(((.((((......)).))..(((((((((((((((((......))))..)))).))))).)))).....)))...--....... ( -19.90)
>DroEre_CAF1 86621 91 + 1
CUCACACCAACACGCACGUU-----CUGACACUGAGCUCCGAGUUGCUCAAUUAAUUUUGAUUGCAGCCUUGGCAGCUGUUUUUGCUUU--UCCCCUA
.............(((.((.-----...))....(((((((((((((((((......))))..)))).))))).)))).....)))...--....... ( -19.20)
>DroYak_CAF1 119594 91 + 1
CUUACACGAAGACGAACGUU-----CUGACACUGAGCUCCGAGUUGCUCAAUUAAUUUUGAUUGCAGCCUUGGCAGCUGUUUUUGCUUU--UCCCCUA
......(((((((....((.-----...))....(((((((((((((((((......))))..)))).))))).)))))))))))....--....... ( -22.30)
>DroAna_CAF1 78595 89 + 1
CCCACACUG----GCAUAUU-----CUGACACUGAGCUCCGAGCUGCUCAAUUAAUUUUGAUUGCAGCCUUGGCAGCUGUUUUUGCUUUUUUCUCGUA
........(----(((....-----..((((....((((((((((((((((......))))..)))).))))).)))))))..))))........... ( -21.80)
>consensus
CUCACACCAACACGCACGUU_____CUGACACUGAGCUCCGAGUUGCUCAAUUAAUUUUGAUUGCAGCCUUGGCAGCUGUUUUUGCUUU__UCCCCUA
..................................(((((((((((((((((......))))..)))).))))).)))).................... (-18.14 = -17.98 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:36 2006