| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,993,555 – 15,993,652 |
| Length | 97 |
| Max. P | 0.997506 |
| Location | 15,993,555 – 15,993,652 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 71.28 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -14.38 |
| Energy contribution | -14.83 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.56 |
| SVM decision value | 2.87 |
| SVM RNA-class probability | 0.997506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15993555 97 + 27905053 GGUUUCCAGUUUGGAAAAUGAGUGUAAUU-C-GUU-AUUUUCCAAAUUGGAGAGAGCAUUUGCAGUUCGUAUAUCACAUUUGCGAUGGAGUGCGCCCACC (((((((((((((((((((((.((.....-)-)))-)))))))))))))))))..((((((.((..(((((.........)))))))))))))..))... ( -33.80) >DroSim_CAF1 87644 82 + 1 GGCUUGC-----------------UAAUUUCACUC-AUUUUCCAAACUGGAGAGAGCAUUUCCACUUCGUAUAUCCCAUUUGCGAUGGAGUGCGCCCACC (((....-----------------...........-.((((((.....)))))).(((((.(((..(((((.........)))))))))))))))).... ( -22.00) >DroYak_CAF1 119292 82 + 1 GGCUCGC-----------------UUAUUAUAGAAAAUUGUUCAAACUGGGAAGAGCAUUUCCACUUCGUCUAUCGCAUUUGUGAUGGA-UGCGCCCACC (((....-----------------.......................((((((.....))))))...((((((((((....))))))))-)).))).... ( -21.50) >consensus GGCUUGC_________________UAAUU_CAGUA_AUUUUCCAAACUGGAGAGAGCAUUUCCACUUCGUAUAUCACAUUUGCGAUGGAGUGCGCCCACC (((..................................((((((.....)))))).(((((((....(((((.........))))).)))))))))).... (-14.38 = -14.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:35 2006