| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,992,976 – 15,993,083 |
| Length | 107 |
| Max. P | 0.698588 |
| Location | 15,992,976 – 15,993,083 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.45 |
| Mean single sequence MFE | -24.91 |
| Consensus MFE | -16.04 |
| Energy contribution | -16.48 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15992976 107 - 27905053 GCGGCUCACUUUUGUUUCUUGGCCA-AGACAAGGGGCCAACUGUUGCGCAUAAAUAAGCAAUAGAAAAUGGGCUUUAAAGAACAACAGUCGAAU------------AGGCAAGAGAAACA ............((((((((.(((.-.(((.((((.(((.(((((((..........)))))))....))).))))...(.....).)))....------------.)))..)))))))) ( -26.30) >DroPse_CAF1 88013 115 - 1 GGGUUGGAUCUUUGUAGCUUGGCCA-AAACAAUGGACCAACUGUUGCGCAUAAAUAAGAAACAGAAAAUGUGCUUUAAAGAAUAAUAAUGGAAA----CAGAGAAACGGAAACAGAAACA ..((((..((((((.((((((((((-......))).))))(((((...(........).))))).......))).)))))).))))..((....----)).......(....)....... ( -23.30) >DroSim_CAF1 87188 107 - 1 CCGGCUCACUUUUGUUUCUUGGCCA-AGACAAGGGGCCAACUGUUGCGCAUAAAUAAGCAAUGGAAAAUGGGCUUUAAAGAACAACAGUCGAAU------------AGGCAAGAGAAACA ........(((((((((..(((((.-........)))))(((((((..(......((((.((.....))..))))....)..))))))).....------------)))))))))..... ( -25.20) >DroEre_CAF1 84871 107 - 1 GCGGCUCACUUUUGUUUCUUGGCCA-AGACAACGGGCCAACUGUUGCGCAUAAAUAAGCAAUGGAAAAUGGGCUUUAAAGAGCAACAGUCGAAU------------GGGCAAAAGAAACA ........(((((((((..(((((.-........)))))((((((((........((((.((.....))..))))......)))))))).....------------)))))))))..... ( -29.04) >DroYak_CAF1 118514 107 - 1 GCGGCUAACUUUUGUUUCUUGGCCA-AGACAUCGGGCCAACUGUUGCGCAUAAAUAAGCAAUGGAAAAUGGGCUUUUAAGAACAACAGUCGAAU------------GGACAAAAGAAAAA ........(((((((((..(((((.-........)))))(((((((..(.((((..(((.((.....))..))))))).)..))))))).....------------)))))))))..... ( -26.30) >DroAna_CAF1 78086 112 - 1 GCGGCUCACUUUCAUUUUUUAGCCAGAAACAACCGAACAACUGUUGCGCAUAAAUAAGCAACAGA-AAUGGGCUUUAAA-AACAACGGUCAAUUCUCACA------AAACAAAAAAAAUA ..((((..............))))((((...((((.....(((((((..........))))))).-..((.........-..)).))))...))))....------.............. ( -19.34) >consensus GCGGCUCACUUUUGUUUCUUGGCCA_AGACAACGGGCCAACUGUUGCGCAUAAAUAAGCAAUAGAAAAUGGGCUUUAAAGAACAACAGUCGAAU____________AGGCAAAAGAAACA ..((((((..........((((((..........))))))(((((((..........)))))))....)))))).............................................. (-16.04 = -16.48 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:34 2006