Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,981,466 – 15,981,556 |
Length | 90 |
Max. P | 0.606315 |
Location | 15,981,466 – 15,981,556 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -24.06 |
Consensus MFE | -14.91 |
Energy contribution | -14.19 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.30 |
Mean z-score | -1.84 |
Structure conservation index | 0.62 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606315 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15981466 90 - 27905053 UAUAACG------CUGUGUGGGCUUGUGUUUA--GAGCAGAGUGUAUAAAUAUUUGGGUGGAAA--------ACACAAGUGCAGGCAAACAAAUCGAAAAGGACGC .......------.(((.((.((((((((((.--..((.((((((....))))))..))...))--------)))))))).)).)))................... ( -24.00) >DroSim_CAF1 84743 96 - 1 UAUAACUCUGAAACUGUGUGGGCUUGUGUUUA--GAGCAGAGUGUAUAAAUAUUUGGGUGGAAA--------ACACAAGUGCAGGCAAACAAAUCGAAAAGGACGC ..............(((.((.((((((((((.--..((.((((((....))))))..))...))--------)))))))).)).)))................... ( -24.00) >DroEre_CAF1 82523 96 - 1 UAUAGCUCUGAUCUUGCGUGGGCUUGUGUUUA--GAGCAUAGUGUAUAAAUAUUUGGGUGGAAA--------ACACAAGUGCAGGCAAACGAAUCGAAAAGGACGC ....(..((..((((((.((.((((((((((.--..((..(((((....)))))...))...))--------)))))))).)).)))).......))..))..).. ( -25.81) >DroYak_CAF1 113433 96 - 1 UAUAACUCUGAUCUUGUGUGGGCUUGUGUUUA--GAGCACAGUGUAUAAAUAUUUGGGUGGAAA--------ACACAAGUGCAGGCAAACAAAUCAAAAAGGACGC ........((((.((((.((.((((((((((.--..((..(((((....)))))...))...))--------)))))))).)).))))....)))).......... ( -23.80) >DroAna_CAF1 75482 106 - 1 UAUAAUUCUGAACGUGUUUGUUUGUCUGUUUGGGGAACACAGUGUAUAAAUAUUUGGGUGGAAAAUCAACUAACACGAGGCCAAACAAACAGUUCGAAAAGAACGG .....(((.((((.(((((((((((((...(((....).))((((.....((.(((..(....)..))).)))))).))).)))))))))))))))))........ ( -22.70) >consensus UAUAACUCUGAACCUGUGUGGGCUUGUGUUUA__GAGCACAGUGUAUAAAUAUUUGGGUGGAAA________ACACAAGUGCAGGCAAACAAAUCGAAAAGGACGC ..............(((.((.((((((((.......((..(((((....)))))...)).............)))))))).)).)))................... (-14.91 = -14.19 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:31 2006