Locus 6091

Sequence ID 3R_DroMel_CAF1
Location 15,973,472 – 15,973,575
Length 103
Max. P 0.629484
window9935

overview

Window 5

Location 15,973,472 – 15,973,575
Length 103
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.17
Mean single sequence MFE -38.42
Consensus MFE -20.00
Energy contribution -21.96
Covariance contribution 1.96
Combinations/Pair 1.16
Mean z-score -2.15
Structure conservation index 0.52
SVM decision value 0.20
SVM RNA-class probability 0.629484
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15973472 103 - 27905053
CAGUAGAGUGCAC-------------AGUCCUCCACAUUAUGGAGCGACAUGGGCAUAAGGGGGCGUGGCACUUAAGCCUUUUCUGCCUACUGUCUCCUCUCG-GGAGGACUCAUUC
.....(((((...-------------((((((((.......(((..((((((((((..(((((((...........))))))).)))))).))))))).....-))))))))))))) ( -39.20)
>DroSec_CAF1 99667 102 - 1
CAGUCGAGUGCAC-------------AGUCCUCCGUAUUAUGGAGCGACAUGGGCAGAAGGGGGAGUGGCACUUAAGCCUUUUCUGCCUACUGUCUCCUCUCG--GCGGACCCAUUC
..((((((.(...-------------.(((((((((...)))))).)))..((((((.(((.((((.(((......)))..)))).))).)))))).).))))--)).......... ( -40.90)
>DroSim_CAF1 76230 103 - 1
CAGUCGAGUGCAC-------------AGUCCCCCGUAUUAUGGAGCGACAUGGGCAGAAGGGGGCGUGGCACUUAAGCCUUUUCUGCCUACUGUCUCCUCUCG-GGCGGACCCAUUC
.....(((((...-------------.((((((((......(((..(((((((((((((((((.(...........)))))))))))))).)))))))...))-)).)))).))))) ( -42.80)
>DroEre_CAF1 74638 101 - 1
CAGUCGAGUGCAC-------------AGUCC-CCAUAUUAAGGGGCGACAUGGGCAGGAGG-GGCGUGGCACUUAAGCCUUUUCUGCCUACUGUCUCCUUCCG-AGCGGACCCAUUC
.....(((((...-------------.((((-(........)))))(((((((((((((((-(((...........)))))))))))))).))))....(((.-...)))..))))) ( -40.50)
>DroYak_CAF1 104976 102 - 1
CAGUCGAGUGCAC-------------AGUCCCCCAUAUUAUGGGGCGACAUGGGCAGAAGG-GGCGUGGCACUUAAGCCUUUUCUGCCUACUGUCUCCUUUCG-AGCGGACCCAUUC
.....(((((...-------------.(((((((((...)))))).))).(((((((((((-(((...........))))))))))))))(((.(((.....)-)))))...))))) ( -43.00)
>DroAna_CAF1 68760 108 - 1
CACUCGAGUGCACUGUAACCACAGACAGUUCCCAUUAUUAU-------CUUUGCCA-AUGGAGGCGUGGCACUUAAGCCUUCU-UACCUUUUGUUUGCCCGCACAGUCGUUCAAUUC
.....(((((.(((((.....((((((((..(((((..((.-------...))..)-))))..))..(((......)))....-.......)))))).....))))))))))..... ( -24.10)
>consensus
CAGUCGAGUGCAC_____________AGUCCCCCAUAUUAUGGAGCGACAUGGGCAGAAGGGGGCGUGGCACUUAAGCCUUUUCUGCCUACUGUCUCCUCUCG_AGCGGACCCAUUC
...........................((((..........(((..(((((((((((((((.(((...........)))))))))))))).))))))).........))))...... (-20.00 = -21.96 +   1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:28 2006