Locus 6090

Sequence ID 3R_DroMel_CAF1
Location 15,973,336 – 15,973,432
Length 96
Max. P 0.953566
window9934

overview

Window 4

Location 15,973,336 – 15,973,432
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 97.92
Mean single sequence MFE -17.54
Consensus MFE -15.68
Energy contribution -15.74
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -1.79
Structure conservation index 0.89
SVM decision value 1.43
SVM RNA-class probability 0.953566
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15973336 96 + 27905053
CUUCUUAUCAACUUGAUUGCGUUAAAUGGAACAUUUUCAUUUUCUUUCUUUUUGAUAUAAUUGGGUGUUUAAGGUGAACAAUUUGCGUUCUUCUUU
..(((((...(((..((((..(((((.((((..............)))).)))))..))))..)))...))))).((((.......))))...... ( -18.04)
>DroSec_CAF1 99531 96 + 1
CUUCUUAUCAACUCGAUUGCGUUAAAUGGAACAUUUUCAUUUUCUUUCUUUUUGAUAUAAUUGGGUGUUUAAGGUGAACAAUUUGCGUUCUUCUUU
..(((((...(((((((((..(((((.((((..............)))).)))))..)))))))))...))))).((((.......))))...... ( -19.34)
>DroSim_CAF1 76094 96 + 1
CUUCUUAUCAACUUGAUUGCGUUAAAUGGAACAUUUUCAUUUUCUUUCUUUUUGAUAUAAUUGGGUGUUUAAGGUGAACAAUUUGCGUUCUUCUUU
..(((((...(((..((((..(((((.((((..............)))).)))))..))))..)))...))))).((((.......))))...... ( -18.04)
>DroEre_CAF1 74502 96 + 1
CUUCUUAUCAACUUGAUUGCGUUAAAUGGAACAUUUUCAUUUUCUUUCUUUUUGAUAUAAUUGGGUGUUUAAGGUGAACAAUUUGCGUUCUUCUUU
..(((((...(((..((((..(((((.((((..............)))).)))))..))))..)))...))))).((((.......))))...... ( -18.04)
>DroYak_CAF1 104840 96 + 1
CUUCUUAUCAACUUGAUUGCGUUAAAUGGAACAUUUUCAUUUUCUUUCUUUUGGAUAUAAUUGGGUGUUUAAGGUGAACAAUUUGCGUUCUUCUCU
..(((((...(((..((((..((....((((..............))))....))..))))..)))...))))).((((.......))))...... ( -15.04)
>DroAna_CAF1 68624 96 + 1
CUUCUUAUCAACUUGAUUGCGUUAAAUGGAACAUUUUCAUUUUCUUUCUUUUUGAUAUAAUUGGGUGUUUAAGGUGAACAAUUUUCAUUUUUCUUU
...((((...(((..((((..(((((.((((..............)))).)))))..))))..)))...))))(((((.....)))))........ ( -16.74)
>consensus
CUUCUUAUCAACUUGAUUGCGUUAAAUGGAACAUUUUCAUUUUCUUUCUUUUUGAUAUAAUUGGGUGUUUAAGGUGAACAAUUUGCGUUCUUCUUU
..(((((...(((((((((..(((((.((((..............)))).)))))..)))))))))...))))).((((.......))))...... (-15.68 = -15.74 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:27 2006