Locus 6089

Sequence ID 3R_DroMel_CAF1
Location 15,973,110 – 15,973,219
Length 109
Max. P 0.695730
window9933

overview

Window 3

Location 15,973,110 – 15,973,219
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.22
Mean single sequence MFE -22.22
Consensus MFE -17.93
Energy contribution -17.93
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.81
SVM decision value 0.34
SVM RNA-class probability 0.695730
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15973110 109 - 27905053
----GGCAGCAGAUGGCAACGA---GAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUUAUAUGGCCAACAA----AA
----(((.(((((((((...((---(........)))....(((((.((......)).))))).........................)))))))))((....)).))).....----.. ( -23.10)
>DroPse_CAF1 78613 120 - 1
GGUAGAUGGCAGAUGGCAACAAGAAGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUUAUAUGGCUCAAACCCUCAA
.(((((((.((((((((.....(((((............((((........))))((((((...........)))))).)))))....)))))))))))))))................. ( -21.70)
>DroEre_CAF1 74276 109 - 1
----GGCAGCAGAUGGCAACGA---GAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUUAUAUGGCCAACAC----CA
----(((.(((((((((...((---(........)))....(((((.((......)).))))).........................)))))))))((....)).))).....----.. ( -23.10)
>DroYak_CAF1 104614 109 - 1
----GGCAGCAGAUGGCAAUGA---GAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUUAUAUGGCCAACAC----CG
----(((.(((((((((.((((---(((...........((((........))))((((((...........)))))).)))))))..)))))))))((....)).))).....----.. ( -24.20)
>DroAna_CAF1 68368 108 - 1
----GGCAGCAGAUGGCAACAA---GAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUUAUA-GCCCCACAA----CC
----(((.(((((((((.....---(((((.........((((........))))((((((...........)))))).)))))....))))))))).(....)-)))......----.. ( -19.50)
>DroPer_CAF1 80655 120 - 1
GGUAGAUGGCAGAUGGCAACAAGAAGAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUUAUAUGGCUCAAACCCUCAA
.(((((((.((((((((.....(((((............((((........))))((((((...........)))))).)))))....)))))))))))))))................. ( -21.70)
>consensus
____GGCAGCAGAUGGCAACAA___GAAAAAUCCCUCAAUAUGCAAUUUACCAUAAAUUUGUAAUUUACUGUCAAAUUAUUUUCAUAAGCCAUUUGCAUUUAUAUGGCCAACAC____AA
........(((((((((......................((((........))))((((((...........))))))..........)))))))))....................... (-17.93 = -17.93 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:26 2006