Locus 6088

Sequence ID 3R_DroMel_CAF1
Location 15,968,412 – 15,968,503
Length 91
Max. P 0.913073
window9932

overview

Window 2

Location 15,968,412 – 15,968,503
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 99.56
Mean single sequence MFE -25.04
Consensus MFE -25.02
Energy contribution -24.86
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 1.00
SVM decision value 1.09
SVM RNA-class probability 0.913073
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15968412 91 - 27905053
GGCUCACGGCCCAAUGCCAAACAAAAGGCCAAAUGAGCAGUCGAGGAUACGCACUUAAUCCGGGAUGACAGGCUCACGUAACGACAGCCAA
((((...((((...((.....))...))))...(((((.((((.((((.........))))....))))..))))).........)))).. ( -25.40)
>DroSec_CAF1 94688 91 - 1
GGCUCACGGCCCAAUGCCAAACAAAAGGCCAAAUGAGCAGUCGAGGAUACGCACUUAAUCCGGGAUGACAGGCUCACGUAACGACAGCCAA
((((...((((...((.....))...))))...(((((.((((.((((.........))))....))))..))))).........)))).. ( -25.40)
>DroSim_CAF1 71357 91 - 1
GGCUCACGGCCCAAUGCCAAACAAAAGGCCAAAUGAGCAGUCGAGGAUACGCACUUAAUCCGGGAUGACAGGCUCACGUAACGACAGCCAA
((((...((((...((.....))...))))...(((((.((((.((((.........))))....))))..))))).........)))).. ( -25.40)
>DroEre_CAF1 69723 91 - 1
GGCUCACGGCCCAAUGCCAAACAAAAGGCCAAAUGAGCAGUCGAGGAUACGCACUUAAUCCGGGAUGACAGGCUCACGUAACGACAGCCAA
((((...((((...((.....))...))))...(((((.((((.((((.........))))....))))..))))).........)))).. ( -25.40)
>DroYak_CAF1 100041 91 - 1
GGCUCACGGUCCAAUGCCAAACAAAAGGCCAAAUGAGCAGUCGAGGAUACGCACUUAAUCCGGGAUGACAGGCUCACGUAACGACAGCCAA
((((....(((....(((........)))....(((((.((((.((((.........))))....))))..)))))......))))))).. ( -23.60)
>consensus
GGCUCACGGCCCAAUGCCAAACAAAAGGCCAAAUGAGCAGUCGAGGAUACGCACUUAAUCCGGGAUGACAGGCUCACGUAACGACAGCCAA
((((...((((...((.....))...))))...(((((.((((.((((.........))))....))))..))))).........)))).. (-25.02 = -24.86 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:25 2006