Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,966,775 – 15,966,883 |
Length | 108 |
Max. P | 0.500000 |
Location | 15,966,775 – 15,966,883 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -26.23 |
Consensus MFE | -22.81 |
Energy contribution | -23.03 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -1.73 |
Structure conservation index | 0.87 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15966775 108 - 27905053 GGGUGAGCCAAAGUAGCUCAGAAGGGCAUUGGGGUGGACCAGUGUAGUUAAGAAAUUUUAAAUAGCAAACAAUUAACCAUAAAUUAGGUUCAUCUGAUGGUUGAAUCA .(((.(((((.....((((....))))..(.(((((((((..(((.(((((.....................))))).))).....))))))))).))))))..))). ( -24.80) >DroSec_CAF1 93083 108 - 1 GGGUGGGCCAAAGUAACUCAGAAGAGCAUUGGGGUGGACCAGUGUAGCUCAGAAAUUUUAAAUAGGAAACAUUUAACGAUAAAUUAGAAUCAUCUGAUGGUCGAAUCA .(((.(((((...............(((((((......)))))))...(((((....((((((.(....))))))).(((........))).))))))))))..))). ( -26.90) >DroSim_CAF1 68937 108 - 1 GGGUGAGCCAAAGUAGCUCAGAAGGGCAUUGGGGUGGACCAGUGUAGCUCAGAAAUUUUAAAUAGCAAACAUUUAACCAUAAAUUAGGUUCAUCUGAUGGUUAAAUCA ((((((((((((((..((.((....(((((((......)))))))..)).))..)))))...........(((((....)))))..)))))))))(((......))). ( -27.00) >consensus GGGUGAGCCAAAGUAGCUCAGAAGGGCAUUGGGGUGGACCAGUGUAGCUCAGAAAUUUUAAAUAGCAAACAUUUAACCAUAAAUUAGGUUCAUCUGAUGGUUGAAUCA ((((((((((((((..((.((....(((((((......)))))))..)).))..))))).....(....)................)))))))))(((......))). (-22.81 = -23.03 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:18 2006