Locus 6084

Sequence ID 3R_DroMel_CAF1
Location 15,964,166 – 15,964,262
Length 96
Max. P 0.616572
window9923

overview

Window 3

Location 15,964,166 – 15,964,262
Length 96
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 86.00
Mean single sequence MFE -21.80
Consensus MFE -17.22
Energy contribution -16.97
Covariance contribution -0.25
Combinations/Pair 1.22
Mean z-score -2.03
Structure conservation index 0.79
SVM decision value 0.17
SVM RNA-class probability 0.616572
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15964166 96 + 27905053
CCC-----------UACUUCGCGCU-AAUCCCCUUUACAAAUUUGAGAGCCGUUUAAAUACCCUUCACAAUGCCGGCGGGCUAAUGACUUAGCUCGCCCAAAAGCAAA
...-----------........(((-................(((.(((..((......))..))).)))....((((((((((....))))))))))....)))... ( -21.20)
>DroSec_CAF1 90507 95 + 1
CAC-----------CACUUCGCGCU-AAUCC-CUUUACAAAUUUGAGAGCCAUUUAAAUACCCUUCACAAUGCCGGCGGGCUAAUGACUAAGCUCGCCCAAAAGCAAA
...-----------........(((-.....-........(((((((.....)))))))...............((((((((........))))))))....)))... ( -18.10)
>DroSim_CAF1 66359 96 + 1
CCC-----------CACUUCGCGCU-AAUCCCCUUUACAAAUUUGAGAGCCGUUUAAAUACCCUUCACAAUGCCGGCGGGCUAAUGACUAAGCCCGCCCAAAAGCAAA
...-----------........(((-................(((.(((..((......))..))).)))....((((((((........))))))))....)))... ( -22.20)
>DroEre_CAF1 65485 95 + 1
-CC-----------UACUUCACGCU-GAUCCCCUUUACAAAUUUGGGAGCCGUUUAAAUACCCUUCACAACGCCGGCGGGCUAAUGACUAAGCCCGCCCAAAAGCAAA
-..-----------........(((-..((((............))))..........................((((((((........))))))))....)))... ( -24.30)
>DroYak_CAF1 94781 96 + 1
CCC-----------UACUUCACGCU-AACCUCCUUUACAAAUUUGGGAUCCGUUUAAAUACCCUUCACAACGCCGGCGGGCUAAUGACUAAGCCCGCCCAAAAGCAAA
...-----------........(((-....((((..........))))..........................((((((((........))))))))....)))... ( -22.90)
>DroAna_CAF1 59444 108 + 1
CUUUUAGUUGCAAACAUUUCGGGCUUAAUUCUUUUUACAAAUUAAGGAGCCGUUUAAAUACUCUUCACAAUGCCGGCGGGCUAAUGACUAAGCCAGGCCAAAGGCAAA
.......((((..........(((((((((.........))))))((((..((......)).)))).....)))(((.((((........))))..)))....)))). ( -22.10)
>consensus
CCC___________CACUUCGCGCU_AAUCCCCUUUACAAAUUUGAGAGCCGUUUAAAUACCCUUCACAAUGCCGGCGGGCUAAUGACUAAGCCCGCCCAAAAGCAAA
......................(((...............(((((((.....)))))))...............((((((((........))))))))....)))... (-17.22 = -16.97 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:16 2006