Locus 6082

Sequence ID 3R_DroMel_CAF1
Location 15,963,425 – 15,963,528
Length 103
Max. P 0.832302
window9920

overview

Window 0

Location 15,963,425 – 15,963,528
Length 103
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 83.61
Mean single sequence MFE -38.02
Consensus MFE -25.84
Energy contribution -26.16
Covariance contribution 0.32
Combinations/Pair 1.08
Mean z-score -2.13
Structure conservation index 0.68
SVM decision value 0.72
SVM RNA-class probability 0.832302
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15963425 103 - 27905053
CGAGGCAACCAACGAGGUAUCCAACCUGGAGGCCUG-GGGCGAAGUUUUCAUUCCCGCCAGGUGGGCUAGCGGAUCCCUUGGAUCCGUGGCCAACUCAUCAAGU
.(((...(((..(.((((.(((.....))).)))).-)((((.............)))).))).(((((.(((((((...))))))))))))..)))....... ( -42.52)
>DroSec_CAF1 89784 91 - 1
CGAGGCAACC------------GACCUGGAGGCCUG-GGGCGAAGUUUUCAUUCCCGCCAGGUGGGUGAUCGGAUCCCUUGGAUCCGUGGCCAACUCAUCAAGU
...(((.(((------------.((((((.((..((-..(......)..))...)).)))))).)))...(((((((...)))))))..)))............ ( -36.40)
>DroSim_CAF1 65630 91 - 1
GGAGGCAACC------------AACCUGGAGGCCUG-GGGCGAAGUUUUCAUUCCCGCCAGGUGGGUGAACGGAUCCCUUGGAUCCGUGGCCAACUCAUCAAGU
...(((.(((------------.((((((.((..((-..(......)..))...)).)))))).)))..((((((((...)))))))).)))............ ( -36.30)
>DroEre_CAF1 64771 85 - 1
CGAGGCAGCC------------AACC-----GCCUGGGGGCGAAGUUUUCAUUCCCGCCAGGUGGG--AGCGGGUCCCUUGGAUCCUUGGCCAACUCAUCAAGG
.(((...(((------------((((-----((((((.((.(((.......))))).)))))))).--...((((((...)))))))))))...)))....... ( -41.30)
>DroYak_CAF1 94058 85 - 1
CGAGGCAACC------------AACC-----GCCUGGGGGCGAAGUUUUCAUUCCCACCAGGUGAG--AGCGGAUCCUUGGGAUCCGUUACCAACUCAUCAAGG
.(((......------------...(-----((((((.((.(((.......))))).)))))))..--(((((((((...))))))))).....)))....... ( -33.60)
>consensus
CGAGGCAACC____________AACCUGGAGGCCUG_GGGCGAAGUUUUCAUUCCCGCCAGGUGGG__AGCGGAUCCCUUGGAUCCGUGGCCAACUCAUCAAGU
.(((...........................(((((.(((.(((.......))))).)))))).((...((((((((...))))))))..))..)))....... (-25.84 = -26.16 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:13 2006