| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,960,426 – 15,960,534 |
| Length | 108 |
| Max. P | 0.591522 |
| Location | 15,960,426 – 15,960,534 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.17 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -10.40 |
| Energy contribution | -11.43 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15960426 108 - 27905053 UCAAGGAAAUAAGGGAUACUUCUCACUAUUCUUCAAUCCCAUCAC-CACUCCCAUCCCGU-UUCGUUACAAUGUGGCACCGCCCGCAA----------AUAAAAUGGUGGGGAAAACCCG ....((......(((((..................))))).....-...((((...((((-((..((....(((((......))))))----------)..))))))..))))....)). ( -24.47) >DroPse_CAF1 65472 110 - 1 --GAGGAAA----GGAUACUUUACACUUGUUCCCACUCACCGUACUCCUUGCAAUCCUGCAUUCGUUACAAUGUGACCACGCCCCA--UGCCCAAUCCUUUAAAUGGAAUGAAAAACU-- --..((...----((..((.........))..))..((((.(((.....((((....)))).....)))...))))))........--....((.(((.......))).)).......-- ( -14.70) >DroSec_CAF1 86733 103 - 1 UCAAGGAAAUAAGGGAUACUUCUCACUAUCCUUCACUCCCAUCAC-C-----CACACAGC-UUCGUUACAAUGUGGCACCGCCCACAA----------AUAAAAUGGUGGGGAAAACCCG ....(((....(((((((........)))))))...)))..((.(-(-----(((.((..-((..((....(((((......))))))----------)..)).)))))))))....... ( -23.20) >DroSim_CAF1 62635 99 - 1 UCAAGGAAAUAAGGGAUACUUCUCACUAUCCUUCACUCCCAUCAC-C-----C----CGC-UUCGUUACAAUGUGGCACCGCCCACAA----------AUAAAAUGGUGGGGAAAACCCG ....(((....(((((((........)))))))...))).....(-(-----(----(((-(...(((...(((((......))))).----------.)))...)))))))........ ( -27.40) >DroEre_CAF1 61613 96 - 1 UCAAGGAAAUCAAGGAUACUGCUCACUAUCCUUCACUCUC-------------ACUCCGU-UUCGUUACAAUGUGGCAUUGCCCGCAA----------AUAAAAGGUUGGGAAAAACCCG ....((.....(((((((........)))))))...((((-------------(..((((-......))..(((((......))))).----------......)).))))).....)). ( -19.40) >DroYak_CAF1 90590 105 - 1 ACAAGGAAAUAAAGGAUACUUCUCACUAUCCUUCACUCCC-------------AUUCCGU-UUUGUUACAAUGUGGCACCGCCCACAAUUUCCCAC-AACAAAAUGGUGGGGAAAACCCG ....((.....(((((((........)))))))...((((-------------...((((-((((((....(((((......))))).........-))))))))))..))))....)). ( -28.82) >consensus UCAAGGAAAUAAGGGAUACUUCUCACUAUCCUUCACUCCCAUCAC_C_____CAUCCCGC_UUCGUUACAAUGUGGCACCGCCCACAA__________AUAAAAUGGUGGGGAAAACCCG ....(((....(((((((........)))))))...)))................................(((((......))))).....................(((.....))). (-10.40 = -11.43 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:10 2006