Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,257,778 – 2,257,885 |
Length | 107 |
Max. P | 0.875124 |
Location | 2,257,778 – 2,257,885 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 88.22 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -25.02 |
Energy contribution | -26.30 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.13 |
Mean z-score | -1.56 |
Structure conservation index | 0.79 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2257778 107 + 27905053 UGGUGAUGGCUUUUCCAACUCAACCACCCGCAAAGGAUGUAAAAGUCGGGUCGAAAUGACUUUUGGUUGGGUCUGGGCCCAAUUCCAUCACCUCCUUGUUCAACUUU .((((((((..((((((((((((((..((.....))....((((((((........)))))))))))))))).))))...))..))))))))............... ( -36.80) >DroSec_CAF1 48777 107 + 1 UGGUGAUGGUUUUUCCGACCCAACCACCCGCAAAGAAUGGAAAAGUCGGGUCGAAAUGACUUAUGGUUGGGUCUGAGCCCAAUUCUAGCACCUCCUCGUUCAACUUU .((((.(((..((((.((((((((((.(((.......)))..((((((........)))))).)))))))))).))....))..))).))))............... ( -31.70) >DroSim_CAF1 46900 107 + 1 UGAUGAUGGUUUUUCCGACCCAACCACCCGCAAAGAAUGGAAAAGUCGGGUCGAAAUGACUUAUGGUUGGGUCUGGGCCCAAUUCUAGCACCUCCUCGUUCAACUUU .((.((.(((....((((((((((((.(((.......)))..((((((........)))))).)))))))))).))((.........))))))).)).......... ( -30.10) >DroEre_CAF1 47080 107 + 1 CGCUGAUGGCUUUUCCAACCCAACCACCCGCAAAGGAUGGAAAAGCUGGGUCGAAGCGACUUUUGGUUGGGUCUGGCCGCCAUUCUAUCACCACCUCGUUCAACUUU ....((((((....((((((((((((((.((.............)).))((((...))))...))))))))).)))..))))))....................... ( -30.82) >DroYak_CAF1 44002 107 + 1 UGGAGAUGGCUUUUCCAACCCAACCACCCGCACAGGAUGGAUAAAUCGAGUCGAAAAGACUUUUGCUUGGGUCUGGGUCCAAUUCUAUCACCACCUCGUUCAACUUU (((.(((((..(((((((((((((((.((.....)).))).......(((((.....)))))....)))))).))))...))..))))).))).............. ( -29.10) >consensus UGGUGAUGGCUUUUCCAACCCAACCACCCGCAAAGGAUGGAAAAGUCGGGUCGAAAUGACUUUUGGUUGGGUCUGGGCCCAAUUCUAUCACCUCCUCGUUCAACUUU .((((((((..(((((((((((((((.(((.......))).......(((((.....))))).))))))))).))))...))..))))))))............... (-25.02 = -26.30 + 1.28)
Location | 2,257,778 – 2,257,885 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 88.22 |
Mean single sequence MFE | -35.46 |
Consensus MFE | -27.06 |
Energy contribution | -26.82 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.27 |
Mean z-score | -2.04 |
Structure conservation index | 0.76 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2257778 107 - 27905053 AAAGUUGAACAAGGAGGUGAUGGAAUUGGGCCCAGACCCAACCAAAAGUCAUUUCGACCCGACUUUUACAUCCUUUGCGGGUGGUUGAGUUGGAAAAGCCAUCACCA ...............((((((((..(((((......)))))......(((.....)))(((((((...(((((.....)))))...))))))).....)))))))). ( -38.00) >DroSec_CAF1 48777 107 - 1 AAAGUUGAACGAGGAGGUGCUAGAAUUGGGCUCAGACCCAACCAUAAGUCAUUUCGACCCGACUUUUCCAUUCUUUGCGGGUGGUUGGGUCGGAAAAACCAUCACCA ............((.((((......(((((......)))))......((..(((((((((((((.(((((.....)).))).)))))))))))))..)))))).)). ( -34.10) >DroSim_CAF1 46900 107 - 1 AAAGUUGAACGAGGAGGUGCUAGAAUUGGGCCCAGACCCAACCAUAAGUCAUUUCGACCCGACUUUUCCAUUCUUUGCGGGUGGUUGGGUCGGAAAAACCAUCAUCA ..........((.(((((.......(((((......)))))..........(((((((((((((.(((((.....)).))).)))))))))))))..))).)).)). ( -33.30) >DroEre_CAF1 47080 107 - 1 AAAGUUGAACGAGGUGGUGAUAGAAUGGCGGCCAGACCCAACCAAAAGUCGCUUCGACCCAGCUUUUCCAUCCUUUGCGGGUGGUUGGGUUGGAAAAGCCAUCAGCG ...(((((.((((((((........(((.(......))))........))))))))..(((((((..((((((.....))))))..)))))))........))))). ( -37.09) >DroYak_CAF1 44002 107 - 1 AAAGUUGAACGAGGUGGUGAUAGAAUUGGACCCAGACCCAAGCAAAAGUCUUUUCGACUCGAUUUAUCCAUCCUGUGCGGGUGGUUGGGUUGGAAAAGCCAUCUCCA ..........(((((((((((....((((........))))......)))((((((((((((.....((((((.....)))))))))))))))))).)))))))).. ( -34.80) >consensus AAAGUUGAACGAGGAGGUGAUAGAAUUGGGCCCAGACCCAACCAAAAGUCAUUUCGACCCGACUUUUCCAUCCUUUGCGGGUGGUUGGGUUGGAAAAGCCAUCACCA ............((.((((......(((((......)))))......((..((((((((((((.....(((((.....)))))))))))))))))..)))))).)). (-27.06 = -26.82 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:17 2006