Locus 6078

Sequence ID 3R_DroMel_CAF1
Location 15,958,089 – 15,958,182
Length 93
Max. P 0.937215
window9914

overview

Window 4

Location 15,958,089 – 15,958,182
Length 93
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 73.69
Mean single sequence MFE -21.05
Consensus MFE -9.58
Energy contribution -10.33
Covariance contribution 0.75
Combinations/Pair 1.20
Mean z-score -2.19
Structure conservation index 0.46
SVM decision value 1.26
SVM RNA-class probability 0.937215
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15958089 93 - 27905053
----CUCCCUCUACUGGCAUCUUAAUUUUUGCCUCUUUGCCCAUAAACCAGA------GUGGAAUCCUGC--CCAGCUCUGGCAUUUCGCUUACACCCGGCAUU-U
----...........((((..........))))....((((.......((((------((((........--))).)))))((.....))........))))..-. ( -20.70)
>DroPse_CAF1 63050 91 - 1
----UUCCAUUCCGUGGCAUCUUAAUUUUUCUCGCUUUAGCUAUAAACCAGACAGCCAGUGGAAUCCCGCUGCAAGUCCUGGCUGUUCCC----------AUUUC-
----.........((((................((....))......((((((...((((((....))))))...)).))))......))----------))...- ( -18.30)
>DroSec_CAF1 84401 93 - 1
-----UCCCUCUACUGGCAUCUUAAUUUUUGCCUCUUUGCCCAUAAACCAGA------GUGGAAUCCUGC--CCAGCUCUGGCAUUUCGCUUACACCCGGCUUUUU
-----..........((((..........)))).....(((.......((((------((((........--))).)))))((.....))........)))..... ( -19.50)
>DroEre_CAF1 59420 97 - 1
CUGACUCCCUCCACUGGCAUCUUAAUUUUUGCCUCUUUGGCCAUAAACCAGA------GCGCAAUCCUGC--UCGGCUCUGGCAUUUCGCUUACGCCGGACUUUU-
.............(((((............(((.....)))......(((((------(((((....)))--...)))))))............)))))......- ( -26.60)
>DroYak_CAF1 88289 93 - 1
----CUCCCUCUACUGGCAUCUUAAUUUUCGCCUCUUUGGCCAUAAUCCAGA------GUGGAAUCCUGC--CCAGCUCUGGCAUUUCGCUUACACCAGACUUUU-
----.........((((.............(((.....)))......(((((------((((........--))).)))))).............))))......- ( -21.80)
>DroPer_CAF1 65108 91 - 1
----UUCCAUUCCGUGGCAUCUUAAUUUUUCUCGCUUUAGCCAUAAACCAGACAGCCAGUGGAAUCCCGCUGCAAGUCCUGGCUGUUCCC----------AUUUC-
----.........(((((.....................)))))...((((((...((((((....))))))...)).))))........----------.....- ( -19.40)
>consensus
____CUCCCUCCACUGGCAUCUUAAUUUUUGCCUCUUUGGCCAUAAACCAGA______GUGGAAUCCUGC__CCAGCUCUGGCAUUUCGCUUACACC_G_CUUUU_
...............((((..........))))..............(((((....((((((....)))))).....)))))........................ ( -9.58 = -10.33 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:08 2006