| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,955,405 – 15,955,498 |
| Length | 93 |
| Max. P | 0.741322 |
| Location | 15,955,405 – 15,955,498 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.20 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -14.18 |
| Energy contribution | -14.71 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15955405 93 + 27905053 AAUGCUUUUUCUUUUGCCG----------------------AGCAUUUACAAAAUGUUUUUGGCCUGCG-----CCCGAAAGUAUGUUAUAAAAAUAUUUUAUGACAUGUAAAAAACAUC (((((((...........)----------------------))))))......(((((((((((....)-----))(....)(((((((((((.....)))))))))))..)))))))). ( -19.60) >DroPse_CAF1 60688 120 + 1 AAUGUUUGUUCUUGUGCAGAGAGAAAGGGAGAGAGUGAGAGAGCAUUUACAAAAUGUUUUUAGCCUGCGAGGCCCCCGAAAGUAUGUUAUAAAAAUAUUUUAUGACAUGUAAAAAGCAUC .((((((.(((((.....)))))...(((.........(((((((((.....))))))))).(((.....))).))).....(((((((((((.....)))))))))))....)))))). ( -27.30) >DroSim_CAF1 57173 93 + 1 AAUGCUUUUUCUUUUGCCC----------------------AGCAUUUACAAAAUGUUUUUGGCCUGCG-----CCCGAAAGUAUGUUAUAAAAAUAUUUUAUGACAUGUAAAAAGCAUC .(((((((((((((((...----------------------((((((.....))))))...(((....)-----))))))))(((((((((((.....))))))))))).))))))))). ( -23.30) >DroEre_CAF1 56675 93 + 1 AAUGUUCUUUCUUUUGCCG----------------------AGCAUUUACAAAAUGCUUUUGGCCUGCG-----CCCGAAAGUAUGUUAUAAAAAUAUUUUAUGACAUGUAAAAAGCAUC (((((((...........)----------------------))))))......(((((((((((....)-----))(....)(((((((((((.....)))))))))))..)))))))). ( -22.00) >DroAna_CAF1 51576 93 + 1 AAUGUUUGUUCUUGUGCCG----------------------GGCAUUUACAAAAUGCUUCUGGCCUGGG-----CUGCAAAGUAUGUUAUAAAAAUAUUUUAUGACAUGUAAAAAGCAUC .((((((((((..(.((((----------------------((((((.....)))))..)))))).)))-----).......(((((((((((.....)))))))))))....)))))). ( -24.50) >DroPer_CAF1 62734 120 + 1 AAUGUUUGUUCUUGUGCAGAGAGAAAGGGAGAGAGUGAGAGAGCAUUUACAAAAUGUUUUUGGCCUGCGAGGCCCCCGAAAGUAUGUUAUAAAAAUAUUUUAUGACAUGUAAAAAGCAUC .((((((.(((((.....)))))...(((.........(((((((((.....)))))))))((((.....))))))).....(((((((((((.....)))))))))))....)))))). ( -30.40) >consensus AAUGUUUGUUCUUGUGCCG______________________AGCAUUUACAAAAUGUUUUUGGCCUGCG_____CCCGAAAGUAUGUUAUAAAAAUAUUUUAUGACAUGUAAAAAGCAUC .((((((.......(((.........................)))((((((..((((((((((............))))))))))((((((((.....)))))))).)))))))))))). (-14.18 = -14.71 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:07 2006