Locus 6076

Sequence ID 3R_DroMel_CAF1
Location 15,954,538 – 15,954,657
Length 119
Max. P 0.619528
window9912

overview

Window 2

Location 15,954,538 – 15,954,657
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 90.03
Mean single sequence MFE -36.60
Consensus MFE -28.27
Energy contribution -28.97
Covariance contribution 0.70
Combinations/Pair 1.14
Mean z-score -2.75
Structure conservation index 0.77
SVM decision value 0.18
SVM RNA-class probability 0.619528
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15954538 119 - 27905053
ACUGACAGGAGACGUCAUACGGGGCGUAUGCUUAAUACGCAAAAUACGUGAGCCUGCUUCGAAAUAAGCAUAAUAAAUGCCAGACUGGAAGGCUUCCGUCAAAGGAGCCCGAAAAGCUA
..((((.(....)))))..((((((((((.....)))))).....(((..(((((((((......))))..........((.....)).)))))..)))........))))........ ( -36.30)
>DroSec_CAF1 80963 119 - 1
ACUGACAGGAGACGUCAUACGGGGCGUAUGCUUAAUACGCAAAAUACGUGAGCCUGCUUUGAAAUAAGCAUAAUAAAUGCCAGACUGGAAGGCUUCCGUCAAAGCAGCCCGAAGAGCUA
..((((.(....)))))..((((((((((.....))))))......(....).(((((((((.....((((.....))))......(((.....))).)))))))))))))........ ( -38.00)
>DroSim_CAF1 56307 119 - 1
ACUGACAGGAGACGUCAUACGGGGCGUAUGCUUAAUACGCAAAAUACGUGAGCCUGCUUUGAAAUAAGCAUAAUAAAUGCCAGACUGGAAGGCUUCCGUCAAAGCAGACCGAAAAGCUA
..((((.(....)))))..(((.((((((.....))))))......(....).(((((((((.....((((.....))))......(((.....))).))))))))).)))........ ( -35.70)
>DroEre_CAF1 55832 119 - 1
ACUGGCAGGAAACGUCAUACGGGGCGGAUGCUUAAUACGCAAAAUACGUGAGCCUGCUCCGAAAUAAGCAUAAUAAAUGCCAGACUGGCAGGCUUCCGUCAAAGGAGCCCGAAAAGCUG
..((((.(....)))))..((((((((..((((...(((.......))))))))))))))).....(((........((((.....))))((((.((......))))))......))). ( -39.50)
>DroYak_CAF1 84632 117 - 1
AC--GCAGGAAACGUCAUACGGGGCGUAUGCUUAAUACGCAAAAUACGUGAGCCUGCUCCGAAAUAAGCAUAAUAAAUGCCAGACUGGAAGGCUUCCGUCAAAGCAGCCCGAAAAGCUA
..--((.(....)......((((((((((.....)))))).....(((..(((((..((((......((((.....)))).....)))))))))..)))........))))....)).. ( -36.50)
>DroAna_CAF1 50664 111 - 1
ACUGACAGGAAACGUCAUACGGGGCGUAUGCUUAAUACGCAAAAUACGUGAGCUUGUUCCCAAAUAAGCAUAAUAAAUGUCAGAAUGGCUGGCUUCCUUCAUGGGAAGACG--------
.(((((((....)....((((..((((((.....))))))......)))).(((((((....)))))))........)))))).........((((((....))))))...-------- ( -33.60)
>consensus
ACUGACAGGAAACGUCAUACGGGGCGUAUGCUUAAUACGCAAAAUACGUGAGCCUGCUCCGAAAUAAGCAUAAUAAAUGCCAGACUGGAAGGCUUCCGUCAAAGCAGCCCGAAAAGCUA
..((((.(....)))))..((((((((((.....)))))).....(((..((((((((........)))..........((.....)).)))))..)))........))))........ (-28.27 = -28.97 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:06 2006