Locus 6072

Sequence ID 3R_DroMel_CAF1
Location 15,949,377 – 15,949,471
Length 94
Max. P 0.614800
window9905

overview

Window 5

Location 15,949,377 – 15,949,471
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.80
Mean single sequence MFE -22.40
Consensus MFE -15.15
Energy contribution -15.02
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -1.89
Structure conservation index 0.68
SVM decision value 0.17
SVM RNA-class probability 0.614800
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15949377 94 + 27905053
------------------------CU-GAACCCGACUCCUGCUGACGCAGCUGUUAACAAGGCAAAUAACAACGCAUGCUUGCAUAAAAAUUAUGCA-AGGCUUAACAACCUAAAACUAU
------------------------..-......(((..((((....))))..)))....((((......((.....))((((((((.....))))))-))))))................ ( -17.70)
>DroPse_CAF1 55512 119 + 1
UCCUGGGUCCUGUGACCCCCCGCACU-GCUCUCGACUCCUGCUGACGCAGCUGUUAACAAGGCAAAUAACAACGCAUGCUUGCAUAAAAAUUAUGCAAAGGCUUAACAACCCAAAACUAU
...(((((..(((....((..(((.(-((....(((..((((....))))..))).....(........)...))))))(((((((.....))))))).))....))))))))....... ( -28.10)
>DroEre_CAF1 50723 94 + 1
------------------------CU-GAACCCGACUCCUGCUGACGCAGCUGUUAACAAGGCAAAUAACAACGCAUGCUUGCAUAAAAAUUAUGCA-AGGCUUAACAACCUAAAACUAU
------------------------..-......(((..((((....))))..)))....((((......((.....))((((((((.....))))))-))))))................ ( -17.70)
>DroYak_CAF1 79449 94 + 1
------------------------CU-GAACCGGACUCCUGCUGACGCAGCUGUUAACAAGGCAAAUAACAACGCAUGCUUGCAUAAAAAUUAUGCA-AGGCUUAACAACCUAAAACUAU
------------------------..-.....((....((((....)))).(((((((...((..........))...((((((((.....))))))-))).)))))).))......... ( -18.50)
>DroAna_CAF1 46215 95 + 1
------------------------CUUCCGCAGGAGUCCUGCUGACGCAGCUGUUAACAAGGCAAGUAACAACGCUUGCUUGCAUAAAAAUUAUGCA-AAGCUUAACAACCUACAACUAU
------------------------..((.(((((...))))).))......(((((((.((((((((......))))))))(((((.....))))).-..).))))))............ ( -24.30)
>DroPer_CAF1 57562 119 + 1
UCCUGGGUCCUGUGACCCCCCGCACU-GCUCUCGACUCCUGCUGACGCAGCUGUUAACAAGGCAAAUAACAACGCAUGCUUGCAUAAAAAUUAUGCAAAGGCUUAACAACCCAAAACUAU
...(((((..(((....((..(((.(-((....(((..((((....))))..))).....(........)...))))))(((((((.....))))))).))....))))))))....... ( -28.10)
>consensus
________________________CU_GAACCCGACUCCUGCUGACGCAGCUGUUAACAAGGCAAAUAACAACGCAUGCUUGCAUAAAAAUUAUGCA_AGGCUUAACAACCUAAAACUAU
......................................((((....)))).((((((....((..........))..(((((((((.....))))))..)))))))))............ (-15.15 = -15.02 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:58 2006