Locus 6069

Sequence ID 3R_DroMel_CAF1
Location 15,934,653 – 15,934,758
Length 105
Max. P 0.811960
window9900

overview

Window 0

Location 15,934,653 – 15,934,758
Length 105
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 72.08
Mean single sequence MFE -21.57
Consensus MFE -19.11
Energy contribution -18.57
Covariance contribution -0.55
Combinations/Pair 1.24
Mean z-score -0.38
Structure conservation index 0.89
SVM decision value 0.65
SVM RNA-class probability 0.811960
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15934653 105 + 27905053
UGCUUUGUGGGCGUUGUAGUGGGCGUGGUAUACUCAUGCUGUGUCGACGUCUCACUAUUGGAAAUUUAA-----CCACUUUUUCUGGCCAAAAUUAAUUUGUUGCAUUCA
(((...((((((((((.....(((((((.....)))))))....))))))).)))..(..((((.....-----......))))..)................))).... ( -24.70)
>DroSec_CAF1 64293 88 + 1
UGUUUUGUGAUCGUUGUAGUGGGCGUGGCAUACUCACGCUGUAUCGAUGUCUCACUAUUGGAAAAUUGAUUUGUGCACUUUUUAAAUA----------------------
(((.....(((((..(((((((((((.(.((((.......))))).))))).))))))........)))))...)))...........---------------------- ( -17.70)
>DroSim_CAF1 41800 88 + 1
UGUUUUGUGGGCGUUGUAGUGGGCGUGGCAUACUCGCGCUGUAUCGACGUCUCACUAUUGGAAAAUUGAUUUGUGCACUUUUUAAAUA----------------------
......((((((((((.....(((((((.....)))))))....))))))).)))((((.(((((.((.......)).))))).))))---------------------- ( -22.30)
>consensus
UGUUUUGUGGGCGUUGUAGUGGGCGUGGCAUACUCACGCUGUAUCGACGUCUCACUAUUGGAAAAUUGAUUUGUGCACUUUUUAAAUA______________________
......((((((((((.....(((((((.....)))))))....))))).)))))....................................................... (-19.11 = -18.57 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:53 2006