Locus 6068

Sequence ID 3R_DroMel_CAF1
Location 15,934,235 – 15,934,336
Length 101
Max. P 0.625957
window9899

overview

Window 9

Location 15,934,235 – 15,934,336
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.22
Mean single sequence MFE -29.91
Consensus MFE -18.33
Energy contribution -17.67
Covariance contribution -0.66
Combinations/Pair 1.26
Mean z-score -3.07
Structure conservation index 0.61
SVM decision value 0.19
SVM RNA-class probability 0.625957
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15934235 101 + 27905053
U-CGCCGGGCAG---------------GUGCUUGCCGUUGAGUU-UUAAUUAAUCGAGAACUCAUAAAAAUAUUAAAAUGCAAAAAAGCACUGGGCUUAUGCCCAUACGGCAAU--UCCA
.-.(((((((((---------------....)))))..((((((-((.........))))))))..............(((......))).(((((....)))))..))))...--.... ( -30.80)
>DroSec_CAF1 63875 101 + 1
U-CGCCGGGCAG---------------GUGCUUGCCGUUGAGUU-UUAAUUAAUCGAGAACUCAUAAAAAUAUUAAAAUGCAAAAAAGCACCGGGUUUAUGCCCAUACGGCAAU--UCCA
.-.((((....(---------------((((((....(((.(((-(((((.....((....))........)))))))).)))..)))))))((((....))))...))))...--.... ( -31.32)
>DroSim_CAF1 41390 101 + 1
U-CGCCGGGCAG---------------GUGCUUGCCGUUGAGUU-UUAAUUAAUCGAGAACUCAUAAAAAUAUUAAAAUGCAAAAAAGCACCGGGUUUAUGCCCAUAUGGCAAU--UCCA
.-.((((....(---------------((((((....(((.(((-(((((.....((....))........)))))))).)))..)))))))((((....))))...))))...--.... ( -29.12)
>DroEre_CAF1 40780 101 + 1
U-CGCCGGGCAG---------------GUGCUUGCCGUUGAGUU-UUAAUUAAUCGAAAACUCAUAAAAAUAUUAAAAUGCAAAAAAGACCAGGACUUACGCCCAUACGGCAAU--UCCA
.-.(((((((((---------------....)))))..((((((-((.........))))))))............................((........))...))))...--.... ( -21.60)
>DroYak_CAF1 58732 101 + 1
U-CGCCGCGCAG---------------GUGCUUGCCGUUGAGUU-UUAAUUAAUCGAAAACUCAUAAAAAUAUUAAAAUGCAAAAAAGCACAGGGCUUAUGCCCAUACGGCAAU--UCCA
.-((((.....)---------------))).(((((((((((((-((.........))))))))..............(((......)))..((((....))))..))))))).--.... ( -29.80)
>DroAna_CAF1 35095 120 + 1
UGAGGUGGCCAGCUGCCAAGUGACGUUGAGCUUGUUGUUGAGUUUUUAAUUAAUCGAGAACUCAUAAAAAUAUUUAAAUGCAAAAAUUCGAAGAGCUUAUGGUCAAAUGGCAAAGGGUCG
......((((...(((((..((((..(((((((.....(((((((((........)))))))))........((..(((......)))..)))))))))..))))..)))))...)))). ( -36.80)
>consensus
U_CGCCGGGCAG_______________GUGCUUGCCGUUGAGUU_UUAAUUAAUCGAGAACUCAUAAAAAUAUUAAAAUGCAAAAAAGCACAGGGCUUAUGCCCAUACGGCAAU__UCCA
...............................(((((((((((((.((........)).))))))............................((((....))))..)))))))....... (-18.33 = -17.67 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:52 2006