| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,933,489 – 15,933,600 |
| Length | 111 |
| Max. P | 0.705931 |
| Location | 15,933,489 – 15,933,600 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.65 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -11.36 |
| Energy contribution | -12.39 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15933489 111 + 27905053 UCAAUGCUUUCCUGCAUGUCAUAAUAUAUUCUA--U----UUACUUA---GUUUGGAAAUUUUGAAUAGCGUGUUCUUACAUCCGGACAAAAAAUUCCGGGUAACCGCACUCCGCUGUAU ...((((......)))).(((.(((.((..(((--.----.....))---)..))...))).)))(((((((((..((((..(((((........)))))))))..))))...))))).. ( -23.40) >DroSec_CAF1 63128 111 + 1 UCAAUGCUUUCCUGCAUGACACAAUACAUUCUA--U----UUACUAA---GUUUAAAAACUUUUAAUAGCGUGUUCUUACAUCCGGACAAAAAAUUCCGGGUAACCGCACUCCGCUGUAU (((.(((......))))))....(((((..(((--(----(....((---(((....)))))..))))).((((..((((..(((((........)))))))))..)))).....))))) ( -23.10) >DroSim_CAF1 40644 111 + 1 UCAAUGCUUUCCUGCAUGACACAAUACAUUCUA--U----UUACUUA---GUUUAAAAACUUUUAAUAGCGUGUUCUUACAUCCGGACAAAAAAUUCCGGGUAACCGCACUCCGCUGUAU (((.(((......))))))....(((((..(((--(----(.....(---(((....))))...))))).((((..((((..(((((........)))))))))..)))).....))))) ( -21.90) >DroEre_CAF1 40061 110 + 1 UCAAUGCUUUCCUGUACGUCAUAGUACAU---AUAU----UUACUUA---AUAUGCAAACAAUUAAUAGCGUGUUCUUACAUCUGGACAAAAAAUUCCGGGUAGCCGAACACCGCUGUAU ....(((.....(((((......))))).---((((----(.....)---)))))))........(((((((((((....(((((((........)))))))....))))).)))))).. ( -28.00) >DroYak_CAF1 57967 115 + 1 UCAAUGCUUUCCUGUAAGCCAUUAUACAUUCUAUAU-GCUAUACUUA---A-AUGUAAACAAAUAAUAGCGAGUUCUUACAUCCGGACAAAAAAUUCCGGGUAGCCGCACGCCGCUGUAU ....(((......((((((...((((.....)))).-))).)))...---.-..)))........((((((.((.(....(((((((........)))))))....).))..)))))).. ( -21.70) >DroAna_CAF1 34285 111 + 1 UCAAUGUUCUCCUUCGAAAGUUAACAAAUUUUUUGUUUUUGUAGGAAAUUGUUUAAAAAUU---------CAAACCUUACAUCCGGACAAAAUAUACCAGGUAUCAAUUCGCCGCUAAAA ....(((((((((.(((((....((((.....))))))))).))))....((((.......---------.)))).........)))))..........(((........)))....... ( -13.40) >consensus UCAAUGCUUUCCUGCAUGACAUAAUACAUUCUA__U____UUACUUA___GUUUAAAAACUUUUAAUAGCGUGUUCUUACAUCCGGACAAAAAAUUCCGGGUAACCGCACUCCGCUGUAU ....(((......))).................................................((((((.........(((((((........)))))))..........)))))).. (-11.36 = -12.39 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:49 2006