Locus 6065

Sequence ID 3R_DroMel_CAF1
Location 15,933,133 – 15,933,244
Length 111
Max. P 0.847673
window9895

overview

Window 5

Location 15,933,133 – 15,933,244
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.57
Mean single sequence MFE -32.98
Consensus MFE -21.15
Energy contribution -22.28
Covariance contribution 1.13
Combinations/Pair 1.08
Mean z-score -2.48
Structure conservation index 0.64
SVM decision value 0.78
SVM RNA-class probability 0.847673
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15933133 111 - 27905053
AGCACUCGAACAAUCUUUCCAGUAAUGUGCAGGC---------CCCAUCCAAUCCGCACCCGGUCAUAAUGGGUCCGUCCAGGUUUCAUGGAAAUCUACCACCUAUUCAGGAUACAUAUU
...............((((((..(((.((..((.---------(((((.....(((....))).....))))).))...)).)))...)))))).......(((....)))......... ( -24.20)
>DroSec_CAF1 62775 111 - 1
AGCACUCGAACAAUCUUUCCAGUAAUGUGGAGGA---------CCCAUCCUAUCCGCACCGGGUCAUGAUGGGUCCGUCCAGGUUUCAUGGAAAUCUACCACCUAUUCAGGAUCGAUACU
.....((((......((((((..(((.(((((((---------((((((..(((((...)))))...))))))))).)))).)))...)))))).......(((....))).)))).... ( -41.80)
>DroSim_CAF1 40291 111 - 1
AGCACUCGAACAAUCUUUCCAGUAAUGUGGAGGA---------CCCAUCCUAUCCGCACCGGGUCAUGAUGGGUCCGUCCAGGUUUCAUGGAAAUCUACCACCUAUUCAGGAUCGAUACU
.....((((......((((((..(((.(((((((---------((((((..(((((...)))))...))))))))).)))).)))...)))))).......(((....))).)))).... ( -41.80)
>DroEre_CAF1 39722 117 - 1
---AUAAAAACAAUCUUUCCAGUAAUGUGCAGGCAUCAGUAAUCCCAUCCUAUCCGCAACCGGGAAUGAUGGGUCCGUCUAGGUUUCAUGGAACUCCACCACUAAUUCAGGAUCGAUAUU
---.........(((..(((......(((.((((...((....((((((...((((....))))...)))))).....))..)))))))((....))............)))..)))... ( -24.10)
>consensus
AGCACUCGAACAAUCUUUCCAGUAAUGUGCAGGA_________CCCAUCCUAUCCGCACCCGGUCAUGAUGGGUCCGUCCAGGUUUCAUGGAAAUCUACCACCUAUUCAGGAUCGAUACU
...............((((((..(((.(((((((.........((((((....((......))....))))))))).)))).)))...)))))).......((......))......... (-21.15 = -22.28 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:48 2006