| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,930,768 – 15,930,860 |
| Length | 92 |
| Max. P | 0.999955 |
| Location | 15,930,768 – 15,930,860 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.07 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -13.57 |
| Energy contribution | -14.47 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.66 |
| SVM decision value | 4.84 |
| SVM RNA-class probability | 0.999955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15930768 92 + 27905053 GUCUUACUAGCUAUGCAUUUUAGCUAAAAUUGAGCUGAAACUUGUAU-CAUGUACAAUAUCAUUUUAAC-GUAUAGAGUAUGAAACAGUACA------------------UA .((.((((..((((((.((((((((.......)))))))).((((((-...))))))............-)))))))))).)).........------------------.. ( -18.10) >DroSec_CAF1 60381 90 + 1 GUCGUACUAGCUAUGCAUUUUAGCUAAAAUUUAGUUAAAACGUGUAUACACGUAUCA-----UUCUAAC-GUAU--AGUAUGAAACAGUACAU--------------AUGUA ...(((((.(((((((..((((((((.....))))))))(((((....)))))....-----.......-))))--))).......)))))..--------------..... ( -21.50) >DroSim_CAF1 37849 108 + 1 CUCGUACUAGCGAUGCAGUUUAGC-AAAAUUUAGUUAAAACGUGUAU-CAUGUAUCAUAUCAUUUUCAUUUCAU--AGUAUGAAACAGUAUAUACCAAUAUAUAUAUACAUA .((((((((..((((((.((((((-........))))))...)))))-)(((........)))..........)--)))))))....(((((((........)))))))... ( -22.40) >consensus GUCGUACUAGCUAUGCAUUUUAGCUAAAAUUUAGUUAAAACGUGUAU_CAUGUAUCAUAUCAUUUUAAC_GUAU__AGUAUGAAACAGUACAU______________A__UA .(((((((....((((..((((((((.....))))))))(((((....))))).................))))..)))))))............................. (-13.57 = -14.47 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:42 2006