Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,252,032 – 2,252,134 |
Length | 102 |
Max. P | 0.633290 |
Location | 2,252,032 – 2,252,134 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 85.02 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -17.09 |
Energy contribution | -19.05 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.08 |
Mean z-score | -2.38 |
Structure conservation index | 0.59 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2252032 102 + 27905053 CUUUGUUUGUUUGCUUUACAUUUUUCGUUAGUUGCGUGAGCGCUGUUGCCAAACUUCAGGCAGCAGCCA--GCCACCGAAUCUUGGCUUCAAUUAAAACAGGUU .(((((((..(((.....((...((((...(((((....))(((((((((........))))))))).)--))...))))...))....)))...))))))).. ( -30.70) >DroSec_CAF1 43206 102 + 1 CUUUGUUUGUUUGCUUUACAUUUUUCGUUAGUUGCGUGAGCGCUGUUGCCAAACUUCAGGCAGCAGCCA--GCCACCGAAUCUUGGCUUCAAUUAAAACAGGUU .(((((((..(((.....((...((((...(((((....))(((((((((........))))))))).)--))...))))...))....)))...))))))).. ( -30.70) >DroSim_CAF1 41301 102 + 1 CUUUGUUUGUUUGCUUUACAUUUUUCGUUAGUUGCGUGAGCGCUGUUGCCAAACUUCAGGCAGCAGCCA--GCCACCGAAUCUUGGCUUCAAUUAAAACAGGUU .(((((((..(((.....((...((((...(((((....))(((((((((........))))))))).)--))...))))...))....)))...))))))).. ( -30.70) >DroEre_CAF1 40947 102 + 1 CUUUGUUUGUUUGCUUUACAUUUCUCGGUAGUUGCGUGAGCGCUGUUGCCAAACUUCAGGCAGCAGCUA--GCCACCGAAUCUGGGCUUCAAUUAAAACAGGUU .(((((((..(((.....((....(((((.(((((....))(((((((((........))))))))).)--)).)))))...)).....)))...))))))).. ( -34.80) >DroAna_CAF1 37390 89 + 1 CAU---UUGU----UUUCCUUUU--------CUGGGGGAGCUCUGUUGCCAAACUUCACCCAGACACCACCGCAGCCAAAAGUUAGCUUCAAUUAAAACAGGUU .((---((((----(((.....(--------(((((((((...((....))..)))).)))))).......(((((.....))).)).......))))))))). ( -18.60) >consensus CUUUGUUUGUUUGCUUUACAUUUUUCGUUAGUUGCGUGAGCGCUGUUGCCAAACUUCAGGCAGCAGCCA__GCCACCGAAUCUUGGCUUCAAUUAAAACAGGUU ......((((((((((.((................))))))(((((((((........)))))))))....((((........))))........))))))... (-17.09 = -19.05 + 1.96)
Location | 2,252,032 – 2,252,134 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 85.02 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -16.78 |
Energy contribution | -18.50 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.11 |
Mean z-score | -2.24 |
Structure conservation index | 0.60 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2252032 102 - 27905053 AACCUGUUUUAAUUGAAGCCAAGAUUCGGUGGC--UGGCUGCUGCCUGAAGUUUGGCAACAGCGCUCACGCAACUAACGAAAAAUGUAAAGCAAACAAACAAAG ....(((((((..((..((((((.(((((..((--.....))..)).))).))))))..))(((....)))...............)))))))........... ( -27.90) >DroSec_CAF1 43206 102 - 1 AACCUGUUUUAAUUGAAGCCAAGAUUCGGUGGC--UGGCUGCUGCCUGAAGUUUGGCAACAGCGCUCACGCAACUAACGAAAAAUGUAAAGCAAACAAACAAAG ....(((((((..((..((((((.(((((..((--.....))..)).))).))))))..))(((....)))...............)))))))........... ( -27.90) >DroSim_CAF1 41301 102 - 1 AACCUGUUUUAAUUGAAGCCAAGAUUCGGUGGC--UGGCUGCUGCCUGAAGUUUGGCAACAGCGCUCACGCAACUAACGAAAAAUGUAAAGCAAACAAACAAAG ....(((((((..((..((((((.(((((..((--.....))..)).))).))))))..))(((....)))...............)))))))........... ( -27.90) >DroEre_CAF1 40947 102 - 1 AACCUGUUUUAAUUGAAGCCCAGAUUCGGUGGC--UAGCUGCUGCCUGAAGUUUGGCAACAGCGCUCACGCAACUACCGAGAAAUGUAAAGCAAACAAACAAAG ....(((((((.(((.....))).((((((((.--..((((.((((........)))).))))((....))..)))))))).....)))))))........... ( -29.50) >DroAna_CAF1 37390 89 - 1 AACCUGUUUUAAUUGAAGCUAACUUUUGGCUGCGGUGGUGUCUGGGUGAAGUUUGGCAACAGAGCUCCCCCAG--------AAAAGGAAA----ACAA---AUG ....((((((.((((.(((((.....))))).))))....((((((.((..((((....))))..)).)))))--------).....)))----))).---... ( -26.40) >consensus AACCUGUUUUAAUUGAAGCCAAGAUUCGGUGGC__UGGCUGCUGCCUGAAGUUUGGCAACAGCGCUCACGCAACUAACGAAAAAUGUAAAGCAAACAAACAAAG ....(((((((..((..((((((.(((((((((.......)))))).))).))))))..))(((....)))...............)))))))........... (-16.78 = -18.50 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:14 2006