Locus 6059

Sequence ID 3R_DroMel_CAF1
Location 15,928,469 – 15,928,575
Length 106
Max. P 0.525589
window9883

overview

Window 3

Location 15,928,469 – 15,928,575
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.58
Mean single sequence MFE -20.02
Consensus MFE -8.61
Energy contribution -8.87
Covariance contribution 0.25
Combinations/Pair 1.18
Mean z-score -2.10
Structure conservation index 0.43
SVM decision value -0.02
SVM RNA-class probability 0.525589
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15928469 106 - 27905053
UCCUUCAUCCACCGCCAGUCCAAUCCUCUUCUAUCCACUUUUCCCGCUCGUAUCU--------------CAUCUGCUGAUGAACCGAAGCCGGAAAGACAAAGGCGACAAAAAAAAACCU
............((((.(((...................(((((.(((((....(--------------((((....)))))..)).))).))))))))...)))).............. ( -20.60)
>DroSec_CAF1 45445 104 - 1
UCCGCCAUCCACCGCCGGUCCAAUCCUCUUCUAUCCACUUUUCCCGCUCGCAUCU--------------CAUCUGCUGAUGAACCGAAGCCGGAAAGACAAAGGCGACAAA--AAAACCU
............((((((......))............((((((.(((((....(--------------((((....)))))..)).))).)))))).....)))).....--....... ( -24.00)
>DroSim_CAF1 35554 99 - 1
-----AAUCCACCGCCGGUCAACUCCUCUUCUAUCCACUUUUCCCGCUCGCAUCU--------------CAUCUGCUGAUGAACCGAAGCCGGAAAGACAAAGGCGACAAA--AAAACCU
-----.......((((((......))............((((((.(((((....(--------------((((....)))))..)).))).)))))).....)))).....--....... ( -24.00)
>DroEre_CAF1 34790 95 - 1
UCA---------CACCAAUCCAAUCCUCUGCUAUCCACUCCUCCCGCUCGCAUCU--------------CAUCUGCUGAUGAACCGAAGUCGGAAAGACAAAGGCGACAAA--AAAACCU
...---------............(((.((((.((((((........(((....(--------------((((....)))))..)))))).))).)).)).))).......--....... ( -14.40)
>DroYak_CAF1 47703 95 - 1
UCA---------CACAAAUCCAAUCCUCUUCUAUCCACUUUUCCCGCUCGCAUCU--------------CAUCUGCUGAUGAACCGAAGCCGGAAAGACAAAGACGACAAA--AAAACCU
...---------..............((.(((......((((((.(((((....(--------------((((....)))))..)).))).))))))....))).))....--....... ( -15.90)
>DroAna_CAF1 29600 116 - 1
UC---AAUCCACUCCAAUCCGAAUGCCCCGCAUUUCACUUG-CCACCUCGCAUCCCGCGCAUACCACACCACCAGCUGAUGAACAGAAGCCGGAAAGACAAAGGCGGCGAAAAAAGACCU
..---...............((((((...))))))...(((-((.((((((.....)))............((.(((..(....)..))).))........))).))))).......... ( -21.20)
>consensus
UC____AUCCACCGCCAGUCCAAUCCUCUUCUAUCCACUUUUCCCGCUCGCAUCU______________CAUCUGCUGAUGAACCGAAGCCGGAAAGACAAAGGCGACAAA__AAAACCU
...............................................((((..................((((....))))..(((....)))..........))))............. ( -8.61 =  -8.87 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:36 2006