Locus 6058

Sequence ID 3R_DroMel_CAF1
Location 15,926,383 – 15,926,474
Length 91
Max. P 0.514031
window9882

overview

Window 2

Location 15,926,383 – 15,926,474
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 91.07
Mean single sequence MFE -18.43
Consensus MFE -15.00
Energy contribution -15.08
Covariance contribution 0.09
Combinations/Pair 1.08
Mean z-score -1.92
Structure conservation index 0.81
SVM decision value -0.04
SVM RNA-class probability 0.514031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15926383 91 - 27905053
-------AUUUCCAUUCUCUUUUCACACGCAACGUGUGUUCAAGCCCAGCCAAAUUAAAUUUUACAUUAAUUGUGAAAAGAAUGCAAACGGAAAGGCC
-------.(((((.....(((..((((((...))))))...)))....((...(((...(((((((.....)))))))..)))))....))))).... ( -16.90)
>DroSec_CAF1 43330 91 - 1
-------AUUUCCAUUCCCUUUUCACACGCAACGUGUGUUCAAGCCCAGCCAAAUUAAAUUUUACAUUAAUUGUGAAAAGAAUGCAAACGGAAAGGAC
-------...(((.(((((((..((((((...))))))...)))....((...(((...(((((((.....)))))))..)))))....)))).))). ( -19.50)
>DroSim_CAF1 33433 91 - 1
-------AUUUCCAUUCCCUUUUCACACGCAACGUGUGUUCAAGCCCAGCCAAAUUAAAUUUUACAUUAAUUGUGAAAAGAAUGCAAACGGAAAGGCC
-------..........(((((((((((((...)))))).........((...(((...(((((((.....)))))))..)))))....))))))).. ( -17.60)
>DroEre_CAF1 32714 91 - 1
-------CUAUCCACUCCCUUUUCACACGCAACGUGUGUUCAAGCCCAGCCAAAUUAAAUUUUACAUUAAUUGUGAAAAGAAUGCAAACGGAAAGGCC
-------..........(((((((((((((...)))))).........((...(((...(((((((.....)))))))..)))))....))))))).. ( -17.60)
>DroYak_CAF1 45638 91 - 1
-------CUAUCUAUUCCCUUUUCACACGCAACGUGUGCUCAAGCACAGCCAAAUUAAAUUUUACAUUAAUUGUGAAAAGAAUGCAAACGGAAAGGCC
-------..........(((((((....(((...(((((....)))))...........(((((((.....)))))))....)))....))))))).. ( -20.80)
>DroAna_CAF1 27712 98 - 1
AAGACCCUUUGCCAAUCCCUUUUCACACGCAACGUGUGCUCAAGCCAAGUCAAAUUAAAUUUUACAUUAAUUGUGAAAAGAAUGCAAACGGAAAAAGG
....((.(((((......((((((((.....((.((.((....)))).))..((((((........))))))))))))))...))))).))....... ( -18.20)
>consensus
_______AUUUCCAUUCCCUUUUCACACGCAACGUGUGUUCAAGCCCAGCCAAAUUAAAUUUUACAUUAAUUGUGAAAAGAAUGCAAACGGAAAGGCC
.................((((((((((((...)))))...........((...(((...(((((((.....)))))))..)))))....))))))).. (-15.00 = -15.08 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:35 2006