| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,926,125 – 15,926,218 |
| Length | 93 |
| Max. P | 0.558945 |
| Location | 15,926,125 – 15,926,218 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 93.53 |
| Mean single sequence MFE | -18.80 |
| Consensus MFE | -16.15 |
| Energy contribution | -16.79 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15926125 93 - 27905053 CAGGAUACAAAAAA-AAAAAAGAAAUAGAGUCGCUAAGGGAUUUUAUUUAUAGGGGGAGACUCUAGAAUUCUUUUGCUGAGUGUGUGUAACGAG ..(.(((((.....-..(((((((((((((((.(...).)))))))).....((((....))))....)))))))......))))).)...... ( -19.82) >DroSec_CAF1 43075 94 - 1 CAGGAUACAAAAAAAAAAAAAGAAAUAGAGUCGCUAGGGGAUUUUAUUUAUAGGGGGAGACUCUAGAAUUCUUUUGCUGAGUGUGUGUAACGAG ....(((((........(((((((((((((((.(...).)))))))).....((((....))))....)))))))........)))))...... ( -19.79) >DroSim_CAF1 33180 88 - 1 CAGGAUACAAAA------AAAGAAAUAGAGUCGCUAGGGGAUUUUAUUUAUAGGGGGAGACUCUAGAAUUCUUUUGCUGAGUGUGUGUAACGAG ..(.(((((..(------((((((((((((((.(...).)))))))).....((((....))))....)))))))......))))).)...... ( -18.80) >DroEre_CAF1 32464 89 - 1 CAGGAUCCAAAAA----AAGAGAAAUAGAGUCGCCAGGGGAUUUUAUUUAUAGG-GGAGCCUCUAGAAUUCUUUUGCUGAGUGUGUGUAACGAG ..(.(..((..((----(((((((((((((((.(....))))))))))).((((-(....)))))...)))))))..))..).).......... ( -18.60) >DroYak_CAF1 45394 91 - 1 CAGGAUCCAAAAA---AAAAAGAAAUAGAGUCGCUUGGGGAUUUUAUUUAUAGGGGGAGACUCUAGAAUUCUUUUGCUGAGUGUGUGUAACGAG .............---........(((.(.((((..(((((((((.......((((....)))))))))))))..)).)).).)))........ ( -17.01) >consensus CAGGAUACAAAAA___AAAAAGAAAUAGAGUCGCUAGGGGAUUUUAUUUAUAGGGGGAGACUCUAGAAUUCUUUUGCUGAGUGUGUGUAACGAG ....(((((........(((((((((((((((.(...).)))))))).....((((....))))....)))))))........)))))...... (-16.15 = -16.79 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:34 2006