Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,925,943 – 15,926,051 |
Length | 108 |
Max. P | 0.990874 |
Location | 15,925,943 – 15,926,051 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 96.32 |
Mean single sequence MFE | -29.95 |
Consensus MFE | -26.48 |
Energy contribution | -26.70 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.56 |
Structure conservation index | 0.88 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15925943 108 + 27905053 GUGCUUGUGUUUGAACAGGAUAUGCUCGUGCUCCGCUUAUAAUUGGAGCAUAAAGAGAAGCUGUAAGAGAUGUGCAAGGCCGUAAAAAAGGCCAGGAAGUGGCAACAG-- .(((.(((.(((..((((......(((((((((((........))))))))...)))...)))).))).))).))).((((........))))......((....)).-- ( -31.30) >DroSec_CAF1 42887 108 + 1 GUGCUUGUGUUUGAACAGGAUAUGCUCGUGCUCCGCUUAUAAUUGGAGCAUAAAGUGAAGCUGUAAGAGAUGUGCAAGGCCGUAAAAAAGGCCAGGAAGUGGCAACAG-- .(((.(((.(((..((((..(.((((.((((((((........))))))))..)))).).)))).))).))).))).((((........))))......((....)).-- ( -30.50) >DroSim_CAF1 32992 108 + 1 GUGCUUGUGUUUGAACAGGAUAUGCUCGUGCUCCGCUUAUAUUUGGAGCAUAAAGUGAAGCUGUAAGAGAUGUGCAAGGCCGUAAAAAAGGCCAGGAAGUGGCAACAG-- .(((.(((.(((..((((..(.((((.((((((((........))))))))..)))).).)))).))).))).))).((((........))))......((....)).-- ( -30.50) >DroEre_CAF1 32258 110 + 1 GUGCCUGUGUUUGAACAGGAUAUGCUCGUGCUCCGCUUAUAAUUGGAGCAUAAAGUGAAGCUGUAAGAGAUGUGCAAGGCCGUAAAAAAGGCCAGGAAGUGGCAACAGCA ...(((((......)))))((((.(((((((((((........))))))))..((.....))....)))))))((..((((........))))......((....)))). ( -34.70) >DroYak_CAF1 45207 107 + 1 G-GCUUGUGUUUGAACAGGAUAUGCUCGUGCUCCGCUUAUAAUUGGAGCAUAAAGUGAAGCUGUAAGAGAUGUGCAAGACCGUAAAAAAGGCCAGGAAGUGGCAACAG-- (-((((((.(((..((((..(.((((.((((((((........))))))))..)))).).))))..)))....))))).)).........((((.....)))).....-- ( -28.20) >DroAna_CAF1 27032 108 + 1 GUGCUUGUGUUUGAACAGGAUAUUCUCGUGCUCUGCUUAUAAUUGGAGCAUAAAGUGAAGCUGUAAGAAAUGUGCAAGGCCGUAAAAAGGGCCAGGAAGUGGCAAAAG-- .(((((((.(((..((((....(((.(((((((((........))))))))...).))).))))..)))....))))((((........))))........)))....-- ( -24.50) >consensus GUGCUUGUGUUUGAACAGGAUAUGCUCGUGCUCCGCUUAUAAUUGGAGCAUAAAGUGAAGCUGUAAGAGAUGUGCAAGGCCGUAAAAAAGGCCAGGAAGUGGCAACAG__ .(((((((......)))(.((((.(((((((((((........))))))))..((.....))....))))))).)..((((........)))).......))))...... (-26.48 = -26.70 + 0.22)
Location | 15,925,943 – 15,926,051 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 96.32 |
Mean single sequence MFE | -23.07 |
Consensus MFE | -21.01 |
Energy contribution | -21.07 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.95 |
Structure conservation index | 0.91 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15925943 108 - 27905053 --CUGUUGCCACUUCCUGGCCUUUUUUACGGCCUUGCACAUCUCUUACAGCUUCUCUUUAUGCUCCAAUUAUAAGCGGAGCACGAGCAUAUCCUGUUCAAACACAAGCAC --.(((.((........((((........))))..))))).........((((.......((((((..........)))))).(((((.....)))))......)))).. ( -23.70) >DroSec_CAF1 42887 108 - 1 --CUGUUGCCACUUCCUGGCCUUUUUUACGGCCUUGCACAUCUCUUACAGCUUCACUUUAUGCUCCAAUUAUAAGCGGAGCACGAGCAUAUCCUGUUCAAACACAAGCAC --.(((.((........((((........))))..))))).........((((.......((((((..........)))))).(((((.....)))))......)))).. ( -23.70) >DroSim_CAF1 32992 108 - 1 --CUGUUGCCACUUCCUGGCCUUUUUUACGGCCUUGCACAUCUCUUACAGCUUCACUUUAUGCUCCAAAUAUAAGCGGAGCACGAGCAUAUCCUGUUCAAACACAAGCAC --.(((.((........((((........))))..))))).........((((.......((((((..........)))))).(((((.....)))))......)))).. ( -23.70) >DroEre_CAF1 32258 110 - 1 UGCUGUUGCCACUUCCUGGCCUUUUUUACGGCCUUGCACAUCUCUUACAGCUUCACUUUAUGCUCCAAUUAUAAGCGGAGCACGAGCAUAUCCUGUUCAAACACAGGCAC .(((((...........((((........)))).............))))).....((..((((((..........))))))..)).....(((((......)))))... ( -27.25) >DroYak_CAF1 45207 107 - 1 --CUGUUGCCACUUCCUGGCCUUUUUUACGGUCUUGCACAUCUCUUACAGCUUCACUUUAUGCUCCAAUUAUAAGCGGAGCACGAGCAUAUCCUGUUCAAACACAAGC-C --.....((((.....)))).........((.((((........................((((((..........)))))).(((((.....))))).....)))))-) ( -21.70) >DroAna_CAF1 27032 108 - 1 --CUUUUGCCACUUCCUGGCCCUUUUUACGGCCUUGCACAUUUCUUACAGCUUCACUUUAUGCUCCAAUUAUAAGCAGAGCACGAGAAUAUCCUGUUCAAACACAAGCAC --...............((((........))))................((((.......((((.........))))(((((.((.....)).)))))......)))).. ( -18.40) >consensus __CUGUUGCCACUUCCUGGCCUUUUUUACGGCCUUGCACAUCUCUUACAGCUUCACUUUAUGCUCCAAUUAUAAGCGGAGCACGAGCAUAUCCUGUUCAAACACAAGCAC .................((((........))))................((((.......((((((..........)))))).(((((.....)))))......)))).. (-21.01 = -21.07 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:33 2006