Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,922,929 – 15,923,045 |
Length | 116 |
Max. P | 0.666726 |
Location | 15,922,929 – 15,923,045 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.16 |
Mean single sequence MFE | -16.37 |
Consensus MFE | -14.85 |
Energy contribution | -14.76 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.14 |
Mean z-score | -1.14 |
Structure conservation index | 0.91 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15922929 116 + 27905053 CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCU-U--UGGCCGACAUAUUAA-AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU (((((((((...........))((((((((...(((((..-.--.))))).........-....))))))))....................................)))))))..... ( -17.59) >DroSec_CAF1 40503 117 + 1 CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU--UGGCCGACAUAUUAA-AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU (((((((((...........))((((((((...(((((....--.))))).........-....))))))))....................................)))))))..... ( -17.59) >DroSim_CAF1 30387 117 + 1 CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU--UGGCCAACAUAUUAA-AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU (((((((((...........))((((((((....((((....--.))))((....))..-....))))))))....................................)))))))..... ( -15.10) >DroEre_CAF1 29692 117 + 1 CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU--UGGCCGACAUAUUAA-AAACGUUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU (((((((((...........))......(((..(((((....--.))))).....((((-((.....))))))...........))).....................)))))))..... ( -16.50) >DroYak_CAF1 39987 117 + 1 CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU--UGGCCGACAUAUUAA-AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU (((((((((...........))((((((((...(((((....--.))))).........-....))))))))....................................)))))))..... ( -17.59) >DroAna_CAF1 24580 120 + 1 UUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUUCGGCCUUUUGCCGGUCAACAUAUUAAAAAACGCUUUUUGAAAUUUCCACUCGACCAAACCAAUUAAAAACAUAAAUUUUCAGCGCCU (((((((........((((((((...........)).))))))..((((......(((((((....)))))))...........))))....................)))))))..... ( -13.83) >consensus CUGAAAAGCAUAUUACAAAAGCCAAAAAGUCUCCGGCCCUUU__UGGCCGACAUAUUAA_AAACGCUUUUUGAAAUUUCCACUUGACCAAACCAAUUAAAAUCAUAAAUUUUCAGCGCCU (((((((((...........))((((((((...(((((.......)))))..............))))))))....................................)))))))..... (-14.85 = -14.76 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:31 2006