| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,921,744 – 15,921,857 |
| Length | 113 |
| Max. P | 0.986088 |
| Location | 15,921,744 – 15,921,857 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.84 |
| Mean single sequence MFE | -26.24 |
| Consensus MFE | -22.99 |
| Energy contribution | -22.77 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.88 |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.986088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15921744 113 + 27905053 AUGGCAUUGUUAUACUCAGCAAUUGCUCCAUGUUCAGCGGUUGUAGAAAUAAAAUAAAGGGCUUCCCACC-CACGGAGGCCAA----AAGAAAAACAAAAACCAAUAAAACAAAAUGG-- .(((..(((((....((.(((((((((........))))))))).))............(((((((....-...)))))))..----......)))))...)))..............-- ( -27.30) >DroSec_CAF1 39332 113 + 1 AUGGCAUUGUUAUACUCAGCAAUUGCUCCAUGUUCAGCGGUUGUAGAAAUAAAAUAAAGGGCUUCCCACC-CACGGAGGCCAA----AAGAAAAACAAAAACCAAUAAAACAAAGCGG-- ...((.(((((....((.(((((((((........))))))))).))............(((((((....-...)))))))..----.....................))))).))..-- ( -28.30) >DroSim_CAF1 29211 113 + 1 UUGGCAUUGUUAUACUCAGCAAUUGCUCCAUGUUCAGCGGUUGUAGAAAUAAAAUAAAGGGCUUCCCACC-CACGGAGGCCAA----AAGAAAAACAAAAACCAAUAAAACAAAGCGG-- ...((.(((((....((.(((((((((........))))))))).))............(((((((....-...)))))))..----.....................))))).))..-- ( -28.30) >DroEre_CAF1 28565 112 + 1 AUGGCAUUGUUAUACUCAGCAAUUGCUUCAUGUUCAGCGGUUGUAGAAAUAAAAUAAAGGGCUUCCCACC-CACAGAGGCCAA-----GGAAAAACAAAAGCCAAUAAAACAAAAUGG-- .((((.(((((....((.(((((((((........))))))))).))............((((((.....-....))))))..-----.....)))))..))))..............-- ( -26.80) >DroYak_CAF1 38857 114 + 1 AUGGCAUUGUUAUACUCAGCAAUUGCUUCAUGCUCAGCGGUUGUAGAAAUAAAAUAAAGGGCUUCCCACC-CACAGAGGCCAA-----AGAAAAACAAAAACCAAUAAAACAAAAUGGGA .(((..(((((....((.(((((((((........))))))))).))............((((((.....-....))))))..-----.....)))))...)))................ ( -23.60) >DroAna_CAF1 22225 115 + 1 AUGGCAUUGUUAUAUCCAGCAAUUGUUUCAUGUUCGGCGGUUGUUGGAAUAAAAUAAAAGACAUCCCGCAAAACAGAAGCCAGAGGAAAGGAAAACAAAAACCAAUAAAACAUAU----- .(((..(((((...(((..(....(((((.((((..((((.((((..............))))..))))..))))))))).....)...))).)))))...)))...........----- ( -23.14) >consensus AUGGCAUUGUUAUACUCAGCAAUUGCUCCAUGUUCAGCGGUUGUAGAAAUAAAAUAAAGGGCUUCCCACC_CACAGAGGCCAA____AAGAAAAACAAAAACCAAUAAAACAAAAUGG__ .(((..(((((....((.(((((((((........))))))))).))............((((((..........))))))............)))))...)))................ (-22.99 = -22.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:28 2006