Locus 6052

Sequence ID 3R_DroMel_CAF1
Location 15,921,464 – 15,921,555
Length 91
Max. P 0.652114
window9874

overview

Window 4

Location 15,921,464 – 15,921,555
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 86.81
Mean single sequence MFE -25.20
Consensus MFE -18.36
Energy contribution -20.16
Covariance contribution 1.80
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.73
SVM decision value 0.25
SVM RNA-class probability 0.652114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15921464 91 - 27905053
GUCGUUUGGUCCUUGAAAGGCGAUUAAUACGCCUUAACUUGUUGGCACGCCCAAAUGCCCCAGGCAUUUCACGUUUGCUUGGACAAGGUCC
.......((.(((((.((((((.......))))))........((((........))))(((((((.........))))))).))))).)) ( -30.60)
>DroSec_CAF1 39082 69 - 1
----------------------AUUAAUACGCCUUAACUUGUUGGCACGCCCAAAUGCCCCAGGCAUUUCACGUUUGCUUGGACAAGGUCC
----------------------........(((((........((((........))))(((((((.........)))))))..))))).. ( -18.40)
>DroSim_CAF1 28932 91 - 1
GUCCUUUGGUCUUCGAAAGGCGAUUAAUACGCCUUAACUUGUUGGCACGCCCAAAUGCCCCAGGCAUUUCACGUUUGCUUGGACAAGGUCC
.......((.(.....((((((.......))))))..(((((.((((........))))(((((((.........))))))))))))).)) ( -26.70)
>DroEre_CAF1 28285 91 - 1
GUCCCUUGGCCCUCGAAAGGCGAUUAAUACGCCUUAACUUUUUUGCACGCCCAAAUGCCCCAGGCAUUUCACGUUUGCUUGGACAAGGUCC
(..(((((..((....((((((.......)))))).........(((.((..(((((((...)))))))...)).)))..)).)))))..) ( -27.00)
>DroYak_CAF1 38578 91 - 1
GUCCUUUGGCCUUCGAAAGACGAUUAAUACGCCUUAACUUGUUGGCACGCCCAAUUGCCCCAGGCAUUUCACGUUUGCUUGGACAAGGUCC
(.((((.((((.((....)).)........(((..........)))..)))........(((((((.........)))))))..)))).). ( -23.30)
>consensus
GUCCUUUGGCCCUCGAAAGGCGAUUAAUACGCCUUAACUUGUUGGCACGCCCAAAUGCCCCAGGCAUUUCACGUUUGCUUGGACAAGGUCC
................((((((.......))))))..(((((.((((........))))(((((((.........)))))))))))).... (-18.36 = -20.16 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:27 2006