Locus 6050

Sequence ID 3R_DroMel_CAF1
Location 15,919,454 – 15,919,571
Length 117
Max. P 0.992105
window9872

overview

Window 2

Location 15,919,454 – 15,919,571
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 95.38
Mean single sequence MFE -37.00
Consensus MFE -33.10
Energy contribution -33.38
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.91
Structure conservation index 0.89
SVM decision value 2.31
SVM RNA-class probability 0.992105
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15919454 117 - 27905053
ACAUCCUAUUGGGCCCUGCGUUUAAGCCAUGAUGCACGCAACUUGCUUGCGGUUUUAUUUUGCUUUAUGGCAUUUUUUUCGCGAAACGAUGUGGUUUUCGCCAGCGCCGGGCUUGGU
.......((..(((((.(((((...(((((((.((((((((.....))))).........))).))))))).........(((((((......).)))))).))))).)))))..)) ( -42.20)
>DroSec_CAF1 37156 117 - 1
ACAUCCUAUUGGGCCCUCCGUUUAAGCCAUGAUGCACGCAACUUGCUUGCGGUUUUAUUUUGCUUUAUGGCAUUUUUUUCGCGAAACGAUGUGGUUUUCGCCUGCGCCGGGCUUGGU
.......((..(((((..(((....(((((((.((((((((.....))))).........))).))))))).........(((((((......).))))))..)))..)))))..)) ( -37.30)
>DroSim_CAF1 26949 117 - 1
ACAUCCUAUUGGGCCCUCCGCUUAAGCCAUGAUGCACGCAACUUGCUUGCGGUUUUAUUUUGCUUUAUGGCGUUUUUUUCGCGAAACGAUGUGGUUUUCGCCAGCGCCGGGCUUGGU
.......((..(((((..((((...(((((((.((((((((.....))))).........))).))))))).........(((((((......).)))))).))))..)))))..)) ( -40.40)
>DroEre_CAF1 26396 115 - 1
ACAUCCUAUUUGGCCCUCCGUUUAAGCCAUGAUGCACGCAACUUGCUUGCGGUUUUAUUUUGCUUUAUGGCAUUU-UUUCGCGAAACGAUGUGGUUUUCGCCUGC-CCGGGCUUGGC
....((.....(((((.........(((((((.((((((((.....))))).........))).)))))))....-....(((((((......).))))))....-..))))).)). ( -31.80)
>DroYak_CAF1 29773 116 - 1
ACAUCCUAUUGGGCCCUCCAUUUAAGCCAUGAUGCACGCAACUUGCUUGCGGUUUUAUGUUGCUUUAUGGCAUUU-UUUCGCCGAACGAUGUGGUUUUCGCCUGCGCCGGGCUUGGC
........(..(((((.......(((((((((.((.(((((.....))))))).)))))..))))...(((....-..(((.....))).(((((....))).))))))))))..). ( -33.30)
>consensus
ACAUCCUAUUGGGCCCUCCGUUUAAGCCAUGAUGCACGCAACUUGCUUGCGGUUUUAUUUUGCUUUAUGGCAUUUUUUUCGCGAAACGAUGUGGUUUUCGCCUGCGCCGGGCUUGGU
........(..(((((..(((....(((((((.((((((((.....))))).........))).))))))).........(((((((......).))))))..)))..)))))..). (-33.10 = -33.38 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:25 2006