Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,251,778 – 2,251,894 |
Length | 116 |
Max. P | 0.906888 |
Location | 2,251,778 – 2,251,894 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -24.77 |
Energy contribution | -24.81 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.59 |
Structure conservation index | 0.86 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2251778 116 + 27905053 CAUAAAGAGAGAUACCUUCGAUUCGUGUUACACCUGGCUAUCUGUGUUAUUGUUCUGACCACAAUUGUGGUCUCUUCUCAAGCAGCUGCAGAUAUUUUUGUGCUGCUGUUGUCGUU ......((((((((((...................)).))))..............((((((....))))))...)))).((((((.(((((....)))))))))))......... ( -30.21) >DroSec_CAF1 42975 113 + 1 CAUAAAGACAGAUACCUUCGAUUCAUGUUACACCUGGCUAUCUGUGUUAUUGUUCUGACCACAAUUGUAGUCU---CUCAAGCAGCUGCAGAUAUUUUUGUGCUGCUGUUGUCGUU ....((.(((((((((...................)).))))))).))........(((.(((.(((......---..)))(((((.(((((....))))))))))))).)))... ( -26.31) >DroSim_CAF1 41054 113 + 1 CAUAAAGACAGAUACCUUCGAUUCAUGUUACACCUGGCUAUCUGUGUUAUUGUUCUGACCACAAUUGUAGUCU---CUCAAGCAGCUGCAGAUAUUUUUGUGCUGCUGUUGUCGUU ....((.(((((((((...................)).))))))).))........(((.(((.(((......---..)))(((((.(((((....))))))))))))).)))... ( -26.31) >DroEre_CAF1 40701 111 + 1 CAUAAAGACAGAUACCUUGGGAUCUUGUUACACCUGGCUAUCUGUGUUAUUGUUCUGACCACAAUUGAAGUC-----UCAAGCAGCUGCAGAUAUUUUUGUGCUGCUGUUGUCGUU ....((.(((((((((..((............)).)).))))))).))........(((.(((.((((....-----))))(((((.(((((....))))))))))))).)))... ( -30.70) >DroYak_CAF1 37453 111 + 1 CACAAAGACAGAUACCUUGGGAUCAUGUUACACCUGGCUAUCUGUGUUAUUAUUCCGACCACAAUUGUUGUC-----UCAAGCAGCUGCAGAUAUUUUUGUGCUGCUGUUGUCGUU ....((.(((((((((..((............)).)).))))))).)).......((((.(((.(((.....-----.)))(((((.(((((....))))))))))))).)))).. ( -31.10) >consensus CAUAAAGACAGAUACCUUCGAUUCAUGUUACACCUGGCUAUCUGUGUUAUUGUUCUGACCACAAUUGUAGUCU___CUCAAGCAGCUGCAGAUAUUUUUGUGCUGCUGUUGUCGUU ....((.(((((((((...................)).))))))).)).......((((.(((.(((...........)))(((((.(((((....))))))))))))).)))).. (-24.77 = -24.81 + 0.04)
Location | 2,251,778 – 2,251,894 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -22.94 |
Energy contribution | -23.42 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.09 |
Mean z-score | -1.19 |
Structure conservation index | 0.91 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2251778 116 - 27905053 AACGACAACAGCAGCACAAAAAUAUCUGCAGCUGCUUGAGAAGAGACCACAAUUGUGGUCAGAACAAUAACACAGAUAGCCAGGUGUAACACGAAUCGAAGGUAUCUCUCUUUAUG .....(((((((.(((..........))).)))).))).(((((((((((....)))))).............(((((.((.(((.........)))...))))))).)))))... ( -26.80) >DroSec_CAF1 42975 113 - 1 AACGACAACAGCAGCACAAAAAUAUCUGCAGCUGCUUGAG---AGACUACAAUUGUGGUCAGAACAAUAACACAGAUAGCCAGGUGUAACAUGAAUCGAAGGUAUCUGUCUUUAUG .....(((((((.(((..........))).)))).)))..---.((((((....))))))......((((.(((((((.((.(((.........)))...)))))))))..)))). ( -26.00) >DroSim_CAF1 41054 113 - 1 AACGACAACAGCAGCACAAAAAUAUCUGCAGCUGCUUGAG---AGACUACAAUUGUGGUCAGAACAAUAACACAGAUAGCCAGGUGUAACAUGAAUCGAAGGUAUCUGUCUUUAUG .....(((((((.(((..........))).)))).)))..---.((((((....))))))......((((.(((((((.((.(((.........)))...)))))))))..)))). ( -26.00) >DroEre_CAF1 40701 111 - 1 AACGACAACAGCAGCACAAAAAUAUCUGCAGCUGCUUGA-----GACUUCAAUUGUGGUCAGAACAAUAACACAGAUAGCCAGGUGUAACAAGAUCCCAAGGUAUCUGUCUUUAUG ...(((.((((((((.((........))..)))))(((.-----.....))).))).)))......((((.(((((((.(..((..(......)..))..).)))))))..)))). ( -23.00) >DroYak_CAF1 37453 111 - 1 AACGACAACAGCAGCACAAAAAUAUCUGCAGCUGCUUGA-----GACAACAAUUGUGGUCGGAAUAAUAACACAGAUAGCCAGGUGUAACAUGAUCCCAAGGUAUCUGUCUUUGUG ..((((.((((((((.((........))..)))))(((.-----.....))).))).)))).....((((.(((((((.(..((..(......)..))..).)))))))..)))). ( -24.20) >consensus AACGACAACAGCAGCACAAAAAUAUCUGCAGCUGCUUGAG___AGACUACAAUUGUGGUCAGAACAAUAACACAGAUAGCCAGGUGUAACAUGAAUCGAAGGUAUCUGUCUUUAUG .....(((((((.(((..........))).)))).)))......((((((....))))))......((((.(((((((.((.(((.........)))...)))))))))..)))). (-22.94 = -23.42 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:12 2006