Locus 6047

Sequence ID 3R_DroMel_CAF1
Location 15,915,953 – 15,916,066
Length 113
Max. P 0.698726
window9864

overview

Window 4

Location 15,915,953 – 15,916,066
Length 113
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 75.20
Mean single sequence MFE -23.02
Consensus MFE -6.96
Energy contribution -9.00
Covariance contribution 2.04
Combinations/Pair 1.18
Mean z-score -1.81
Structure conservation index 0.30
SVM decision value 0.35
SVM RNA-class probability 0.698726
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15915953 113 + 27905053
AUGCGUUCUCGCUUGACGGCAUCACAUGUGACAAACUUUAACGAAAGAACAACUUUUGCAUGACAUGGGAAUACGUGUAUAUGUACCAAAUAUAUUCCAUUGCACACAUGCCA
..(((....))).....(((((....((((.(((.......(....).........(((((((((((......))))).))))))..............))))))).))))). ( -25.80)
>DroSec_CAF1 33647 112 + 1
AUGCGUUCUCGCUCGACGGC-UCACAUGUGACAAACUUUAACGAAAGAACAACUUUUGCAUGACAUGGGAAUACGUGUAUAUGCACCAAAUAUAUUCCAUUGCACACAUGCCA
..(((....))).....(((-.....((((.(((.......(....).........(((((((((((......))))).))))))..............)))))))...))). ( -26.00)
>DroSim_CAF1 23439 113 + 1
AUGCGUUCUCGCUCGACGGCAUCACAUGUGACAAACUUUAACGAAAGGACAACUUUUGCAUGACAUGGGAAUACGUGUAUAUGCACCAAAUAUAUUCCAUUGCACACAUGCCA
..(((....))).....(((((....((((.(((........(((((.....)))))((((((((((......))))).)))))...............))))))).))))). ( -28.50)
>DroEre_CAF1 22965 97 + 1
AU-------CGCUUGACGGCAUCACAUAUGAAAAACUUUAACUAAAGAACAACUUUGGCUGGGCAUGGGAAUACGAAU-UGUGCACUAAAUAUA--------CACACAGCCCA
..-------.(((....))).....................((((((.....))))))..((((.((......))...-((((...........--------..)))))))). ( -14.62)
>DroAna_CAF1 16664 89 + 1
AUGUGCACUCGCCCAACUCUCUCACAUAUGACAAACUUUCACGAAAGAAAAACUUUCGCAUUACAUGGGAGU-------------------AUAUCCCAUCGCACACA-----
.(((((...................................((((((.....))))))......((((((..-------------------...)))))).)))))..----- ( -20.20)
>consensus
AUGCGUUCUCGCUCGACGGCAUCACAUGUGACAAACUUUAACGAAAGAACAACUUUUGCAUGACAUGGGAAUACGUGUAUAUGCACCAAAUAUAUUCCAUUGCACACAUGCCA
........................((((((...........((((((.....))))))....(((((......)))))..........................))))))... ( -6.96 =  -9.00 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:17 2006