| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,913,631 – 15,913,721 |
| Length | 90 |
| Max. P | 0.876138 |
| Location | 15,913,631 – 15,913,721 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 94.15 |
| Mean single sequence MFE | -29.48 |
| Consensus MFE | -28.64 |
| Energy contribution | -28.07 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.876138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15913631 90 - 27905053 UAUUUGGGCUGUUUGUUUAGCGCCAGCAUAAACAGUUGUAACAGUUGGCCGUACAAGCCCGCCCGGCUCGCAUCAGAAUCAGAGUCAGAA------ .....((((.((((((...(.((((((....((....))....)))))))..))))))..))))(((((............)))))....------ ( -29.40) >DroSec_CAF1 31272 92 - 1 UAUUUGGGCUGUUUGUUUAGCGCCAGCAUAAACAGUUGUAACAGUUGGUCGUACAAGCCCGCCCGGCUCGCAUCAGAAUCAGAGUCAGGAUC---- .....((((.((((((...((((((((....((....))....))))).)))))))))..))))(((((............)))))......---- ( -28.00) >DroSim_CAF1 21058 92 - 1 UAUUUGGGCUGUUUGUUUAGCGCCAGCAUAAACAGUUGUAACAGUUGGCCGUACAAGCCCGCCCGGCUCGCAUCAGAAUCAGAGCCAGAAUC---- .....((((.((((((...(.((((((....((....))....)))))))..))))))..))))(((((............)))))......---- ( -32.10) >DroYak_CAF1 21954 96 - 1 UAUUUGGGCUGUUUGUUUAGCGCCAGCAUAAACAGCUGUAACAGUUGGCCGUACAAGCCCGCCCGGUUCGCAUCAGAAUCAGAGUCAGAAUCCGAA .....((((.((((((...(.((((((....((....))....)))))))..))))))..))))(((((......)))))................ ( -28.40) >consensus UAUUUGGGCUGUUUGUUUAGCGCCAGCAUAAACAGUUGUAACAGUUGGCCGUACAAGCCCGCCCGGCUCGCAUCAGAAUCAGAGUCAGAAUC____ .....((((.((((((...(.((((((....((....))....)))))))..))))))..))))(((((............))))).......... (-28.64 = -28.07 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:14 2006