Locus 6043

Sequence ID 3R_DroMel_CAF1
Location 15,912,130 – 15,912,240
Length 110
Max. P 0.997146
window9859

overview

Window 9

Location 15,912,130 – 15,912,240
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 98.91
Mean single sequence MFE -23.31
Consensus MFE -22.31
Energy contribution -22.71
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.96
SVM decision value 2.81
SVM RNA-class probability 0.997146
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15912130 110 - 27905053
AUUGCCAGCUGGCAACGUAUUUUAAUUGAAUUUCAAUUGAUUGCAAAAAUGCUCAAUUUGGUGCCGCAACCAAAUUUCAUUUUAAUUAAUUAGAAUUGAUAACAAUAACG
.(((((....)))))(((........(.((((..(((((((((...(((((...((((((((......)))))))).))))))))))))))..)))).)........))) ( -23.89)
>DroSec_CAF1 29942 110 - 1
AUUGCCAGCUGGCAACGUAUUUUAAUUGAAUUUCAAUUGAUUGCAAAAAUGUUCAAUUUGGUGCCGCAACCAAAUUUCAUUUUAAUUAAUUAGAAUUGAUAACAAUAACG
.(((((....)))))(((........(.((((..(((((((((...(((((...((((((((......)))))))).))))))))))))))..)))).)........))) ( -24.59)
>DroSim_CAF1 19550 110 - 1
AUUGCCAGCUGGCAACGUAUUUUAAUUGAAUUUCAAUUGAUUGCAAAAAUGUUCAAUUUGGUGCCGCAACCAAAUUUCAUUUUAAUUAAUUAGAAUUGAUAACAAUAACG
.(((((....)))))(((........(.((((..(((((((((...(((((...((((((((......)))))))).))))))))))))))..)))).)........))) ( -24.59)
>DroEre_CAF1 18934 110 - 1
AUUGCCAGCUGGCAACGUAUUUUAAUUGAAUUUCAAUUGAUUGCAAAAAUGUUCAAUUUGGUGCCGCAACCAAAUUUCAUUUUAAUUAAUUAGAAUUGAUAACAAUAACG
.(((((....)))))(((........(.((((..(((((((((...(((((...((((((((......)))))))).))))))))))))))..)))).)........))) ( -24.59)
>DroYak_CAF1 20495 110 - 1
AUUGGCAGCUGGCAACGUAUUUUAAUUGAAUUUCAAUUGAUUGCAAAAAUGUUCAACUUGGUGCCGCAACCAAAUUUCAUUUUAAUUAAUUAGAAUUGAUAACAAUAACG
.((((..((.((((..(((..(((((((.....))))))).)))........((.....))))))))..))))...(((((((((....)))))).)))........... ( -18.90)
>consensus
AUUGCCAGCUGGCAACGUAUUUUAAUUGAAUUUCAAUUGAUUGCAAAAAUGUUCAAUUUGGUGCCGCAACCAAAUUUCAUUUUAAUUAAUUAGAAUUGAUAACAAUAACG
.(((((....)))))(((........(.((((..(((((((((...(((((...((((((((......)))))))).))))))))))))))..)))).)........))) (-22.31 = -22.71 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:12 2006