| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,904,735 – 15,904,831 |
| Length | 96 |
| Max. P | 0.727557 |
| Location | 15,904,735 – 15,904,831 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 82.06 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -21.51 |
| Energy contribution | -22.02 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.727557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15904735 96 - 27905053 CAGUUUGCGUGGGGAAACUCUCUAUGGACUUUGCUUAAUGAGUGGUUGGCGGCUUGCUUGCGUUUGAUUGCCCCACAUGGUCGC-AAACCACUCUCU------ (((..(.(((((((.....))))))).)..)))......((((((((.((((((.....(((......))).......))))))-.))))))))...------ ( -32.70) >DroSec_CAF1 12126 96 - 1 CACGUCGCGUGGGGAAACUCUCUAUGGACUUUGCUUAAUGAGUGGUUGGCGGCUUGCUUGCGUUUGAUUGCCCCACAUGGUCGA-AAACCACUCACU------ ...(((.(((((((.....)))))))))).........(((((((((..(((((.....(((......))).......))))).-.)))))))))..------ ( -34.80) >DroSim_CAF1 12147 96 - 1 CACGUCGCGUGGGGAAACUCUCUAUGGACUUUGCUUAAUGAGUGGUUGGCGGCUUGCUUGCGUUUGAUUGCCCCACAUGGUCGC-AAACCACUCACU------ ...(((.(((((((.....)))))))))).........(((((((((.((((((.....(((......))).......))))))-.)))))))))..------ ( -36.80) >DroEre_CAF1 11719 94 - 1 UACU---CGUGGGGAAACUCUCUGUGGACUUUCCUUAAUGAGUGGUUGGCGGCUUUCUUGCGUUUGAUUGCCCCACAUGGUCGCCAAACCACUCAUU------ ....---..((((((((.(((....))).))))))))(((((((((((((((((.....(((......))).......))))))).)))))))))).------ ( -37.40) >DroYak_CAF1 13027 97 - 1 UAUUUGGCGUGGGGAAAUUCUCCGUGGGCUUUCCUUAAUGACUGGUUGGCGGCUUUCUUGCGUUUGAUUGCCCCACAUGGUCGCAAAACCGCUUAUU------ .....(((..((((.....))))(((((((..((.........))..)))(((..((........))..)))))))..(((......))))))....------ ( -28.30) >DroAna_CAF1 5672 92 - 1 ------GCGUGGGCCAACUCUC----GAAUACCCUUAAUGAGUGGUUAGCGGCAUUCUUGCCUUUGAUUGUCCUAUAUGGUCGG-AAAUCGCUUACUUACAAC ------.((.(((....))).)----)...........(((((((((...((((....))))((((((..(.....)..)))))-))))))))))........ ( -21.50) >consensus CACUU_GCGUGGGGAAACUCUCUAUGGACUUUCCUUAAUGAGUGGUUGGCGGCUUGCUUGCGUUUGAUUGCCCCACAUGGUCGC_AAACCACUCACU______ .......(((((((.....)))))))............(((((((((..(((((.....(((......))).......)))))...)))))))))........ (-21.51 = -22.02 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:03 2006