Locus 6038

Sequence ID 3R_DroMel_CAF1
Location 15,904,192 – 15,904,282
Length 90
Max. P 0.575000
window9849

overview

Window 9

Location 15,904,192 – 15,904,282
Length 90
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.28
Mean single sequence MFE -23.93
Consensus MFE -15.14
Energy contribution -15.42
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.575000
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15904192 90 + 27905053
GCUUACAACAAUUUGAUGGCAUAUAAUUAUUAGUUCGUAUAAUUUAUGGCUUCAUUUUGG--CUCACAAAGUUGUGA--------------------------ACUGCC--UUGUGUCUU
...(((((.((..(((.(.((((.((((((........)))))))))).).)))..))((--((((((....)))))--------------------------...)))--))))).... ( -18.10)
>DroPse_CAF1 17703 120 + 1
GCUUACAACAAUUUGAUGGCAUAUAAUUAUUAGUUCGUAUAAUUUAUGGCUUCAUUUUGAGCUUCACAAAGUUGUGGAGAGCUCAGUGCUCUGUGUGCUGUGUGCUGCCUCUUGUCUCUU
((......(((..(((.(.((((.((((((........)))))))))).).)))..)))..(((((((....)))))))(((.(((..(.....)..)))...)))))............ ( -29.60)
>DroEre_CAF1 11084 90 + 1
GCUUACAACAAUUUGAUGGCAUAUAAUUAUUAGUUCGUAUAAUUUAUGGCUUCAUUUUGG--CUCACAAAGUUGUGA--------------------------GCUGCC--UUGUGUCUU
...((((((((..(((.(.((((.((((((........)))))))))).).)))..)))(--((((((....)))))--------------------------))....--))))).... ( -24.00)
>DroYak_CAF1 12373 90 + 1
GCUUACAACAAUUUGAUGGCAUAUAAUUAUUAGUUCGUAUAAUUUAUGGCUUCAUUUUGG--CUCACAAAGUUGUGA--------------------------GCUGCC--UUGUGUCUU
...((((((((..(((.(.((((.((((((........)))))))))).).)))..)))(--((((((....)))))--------------------------))....--))))).... ( -24.00)
>DroAna_CAF1 5136 90 + 1
GCUUACAACAAUUUGAUGGCAUAUAAUUAUUAGUUCGUAUAAUUUAUGGCUUCAUUUUGG--CUCACAAAGUUGUUA--------------------------GCCGCC--UUGUGUCUU
(((.(((((....(((.(.((((.((((((........)))))))))).).))).((((.--....))))))))).)--------------------------))....--......... ( -18.30)
>DroPer_CAF1 18571 120 + 1
GCUUACAACAAUUUGAUGGCAUAUAAUUAUUAGUUCGUAUAAUUUAUGGCUUCAUUUUGAGCUUCACAAAGUUGUGGAGAGCUCAGUGCUCUGUGUGCUGUGUGCUGCCUCUUGUCUCUU
((......(((..(((.(.((((.((((((........)))))))))).).)))..)))..(((((((....)))))))(((.(((..(.....)..)))...)))))............ ( -29.60)
>consensus
GCUUACAACAAUUUGAUGGCAUAUAAUUAUUAGUUCGUAUAAUUUAUGGCUUCAUUUUGG__CUCACAAAGUUGUGA__________________________GCUGCC__UUGUGUCUU
...((((((((..(((.(.((((.((((((........)))))))))).).)))..)))....(((((....)))))..................................))))).... (-15.14 = -15.42 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:02 2006