Locus 6037

Sequence ID 3R_DroMel_CAF1
Location 15,903,424 – 15,903,538
Length 114
Max. P 0.989671
window9848

overview

Window 8

Location 15,903,424 – 15,903,538
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.12
Mean single sequence MFE -29.03
Consensus MFE -24.90
Energy contribution -25.40
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.76
Structure conservation index 0.86
SVM decision value 2.18
SVM RNA-class probability 0.989671
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15903424 114 - 27905053
AAAGUUCCUGGC---AUGG--CAAC-AAAAAAGAGCGUUUAAAUUUUGUAAUUUAAAUGCAAAUUGACAGGCAAAUGACAAACAUUGCAAUUAACGAGGGACUAGCGGGCGUAUACGCAA
..(((((((.(.---.((.--...)-).......(((((((((((....)))))))))))..........((((.((.....))))))......).))))))).(((........))).. ( -29.60)
>DroPse_CAF1 16772 117 - 1
AAAGUUCCUAGG---AUGUAGGAUCGCAAAAAGAGCGUUUAAAUUUUGUAAUUUAAAUGCAAAUUGACAGGCAAAUGACAAACAUUGCAAUUAACGAGGGACUAGCGGGCGUAUACGCAA
..(((((((.((---((.....)))((((.....(((((((((((....)))))))))))...(((.((......)).)))...))))......).))))))).(((........))).. ( -29.10)
>DroEre_CAF1 10309 114 - 1
AAAGUUCCCGGC---AUGG--CAAC-AAAAAAGAGCGUUUAAAUUUUGUAAUUUAAAUGCAAAUUGACAGGCAAAUGACAAACAUUGCAAUUAACGAGGGACUAGCGGGCGUAUACGCAA
..((((((((..---...(--(((.-........(((((((((((....)))))))))))...(((.((......)).)))...))))......)).)))))).(((........))).. ( -29.30)
>DroYak_CAF1 11583 114 - 1
AAAGUUCCUGGC---AUGG--CAAC-AAAAAAGAGCGUUUAAAUUUUGUAAUUUAAAUGCAAAUUGACAGGCAAAUGACAAACAUUGCAAUUAACGAGGGACUAGCGGGCGUAUACGCAA
..(((((((.(.---.((.--...)-).......(((((((((((....)))))))))))..........((((.((.....))))))......).))))))).(((........))).. ( -29.60)
>DroAna_CAF1 4374 117 - 1
AAAGUUCCCGGCUGGAUGG--UAAC-AAAAAAGAGCGUUUAAAUUUUGUAAUUUAAAUGCAAAUUGACAGGCAAAUGACAAACAUUGCAAUUAACGAGGGACUAGCGGGCGUAUAAGCAA
..((((((((.(((..((.--...)-).......(((((((((((....))))))))))).......)))((((.((.....))))))......)).)))))).....((......)).. ( -27.50)
>DroPer_CAF1 17609 117 - 1
AAAGUUCCUAGG---AUGUAGGAUCGCAAAAAGAGCGUUUAAAUUUUGUAAUUUAAAUGCAAAUUGACAGGCAAAUGACAAACAUUGCAAUUAACGAGGGACUAGCGGGCGUAUACGCAA
..(((((((.((---((.....)))((((.....(((((((((((....)))))))))))...(((.((......)).)))...))))......).))))))).(((........))).. ( -29.10)
>consensus
AAAGUUCCUGGC___AUGG__CAAC_AAAAAAGAGCGUUUAAAUUUUGUAAUUUAAAUGCAAAUUGACAGGCAAAUGACAAACAUUGCAAUUAACGAGGGACUAGCGGGCGUAUACGCAA
..(((((((.(.......................(((((((((((....)))))))))))..........((((.((.....))))))......).))))))).(((........))).. (-24.90 = -25.40 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:01 2006