| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,903,302 – 15,903,402 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 15,903,302 – 15,903,402 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.54 |
| Mean single sequence MFE | -35.97 |
| Consensus MFE | -25.55 |
| Energy contribution | -25.38 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15903302 100 + 27905053 CAGAUGAGGCUCCGACCAUUUUAGCCCUCCACGUAGCAGGGCCUAAAUUAUGUCCUGUUGCGGAGUCUCGCUGUUCGCCG-AGU---------UGGUUGAGUU---GGUCCGG--- ...........(((((((.(((((((((((..((((((((((.........)))))))))))))).(((((.....).))-)).---------.))))))).)---))).)))--- ( -37.20) >DroPse_CAF1 16627 101 + 1 CAGACCGUUCUCCAGCAAUUUUAGAGCUUCACGUAGCAGGGCCUAAAUUAUGUCCUGUUUCGGAGAGUCGCUUUUG------GU---------UGGUUGAGUCCGGAGUCCGGAGU ....(((..(((((((.......((.(((..((.((((((((.........)))))))).))..))))).......------))---------)((......))))))..)))... ( -32.04) >DroSim_CAF1 10687 101 + 1 CAGAUGAGGCUCCGACCAUUUUAGCCCUCCACGUACCAGGGCCUAAAUUAUGUCCUGUUGCGGAGUCUCGCUGUUCGCCGGAGU---------UGGUUGAGUU---GGUCCGG--- ...........(((((((.(((((((((((.((((.((((((.........)))))).)))).......((.....)).)))).---------.))))))).)---))).)))--- ( -34.80) >DroEre_CAF1 10187 100 + 1 CAGUUGAGGCUCCGACCAUUUUAGCCCUCCACGUAGCAGGGCCUAAAUUAUGUCCUGUUGCGGAGUCUCGCUGUUCGCCG-AGU---------UGGUUGAGUU---GGUCCGG--- ...........(((((((.(((((((((((..((((((((((.........)))))))))))))).(((((.....).))-)).---------.))))))).)---))).)))--- ( -37.20) >DroYak_CAF1 11452 109 + 1 CAGAUGAGGCUCCGACCAUUUUAGCCCUCCACGUAGCAGGGCCUAAAUUAUGUCCUGUUGCGGAGUCUCGCUGUUCGCCG-AGUUGGCUGAGUUGGUUGAGUU---GGUCCGG--- ..(((..(((((.(((((.(((((((((((..((((((((((.........)))))))))))))).(((((.....).))-))..))))))).))))))))))---.)))...--- ( -44.10) >DroPer_CAF1 17471 97 + 1 CAGACCGUUCUCCAGCAAUUUUAGAGCUUCACGUAGCAGGGCCUAAAUUAUGUCCUGUUUCGGAGAGUCGCUUUUG------GU---------UGGUUGAGCCCGGAGUCCG---- ....(((..(((.(.(((((..((((((((.((.((((((((.........)))))))).))..)))..))))).)------))---------)).).)))..)))......---- ( -30.50) >consensus CAGAUGAGGCUCCGACCAUUUUAGCCCUCCACGUAGCAGGGCCUAAAUUAUGUCCUGUUGCGGAGUCUCGCUGUUCGCCG_AGU_________UGGUUGAGUU___GGUCCGG___ (((.(((((((((..........(.....)..((((((((((.........))))))))))))))))))))))........................................... (-25.55 = -25.38 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:00 2006