Locus 6030

Sequence ID 3R_DroMel_CAF1
Location 15,895,539 – 15,895,645
Length 106
Max. P 0.999798
window9836

overview

Window 6

Location 15,895,539 – 15,895,645
Length 106
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 68.03
Mean single sequence MFE -26.50
Consensus MFE -16.59
Energy contribution -18.49
Covariance contribution 1.89
Combinations/Pair 1.14
Mean z-score -2.17
Structure conservation index 0.63
SVM decision value 4.10
SVM RNA-class probability 0.999798
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15895539 106 - 27905053
ACAGAGCA--GUGCAAAAAUGUUUCAAGUCAGCGUGCACACAAAAGCCCACACU---ACAAAUCCCUGAAAGGGGACUCACCC--AUACCAACAUAUACACAAUACAUAGAAA
...(((..--(((((....((........))...)))))...............---.....(((((....))))))))....--............................ ( -19.10)
>DroPse_CAF1 9749 93 - 1
AAAGUGCAUGGCGCAAAAUUG-UUCAAGUCGGCGUGCACACAAAAGCCAACACUUUGACGGUUCCCCUAUGUGGGGGAUAUCCUGGUGGGAAAA-------------------
...(((((((.(((.......-.....).)).)))))))...........((((..((..(((((((.....))))))).))..))))......------------------- ( -30.20)
>DroPer_CAF1 9780 93 - 1
AAAGUGCAUGGCGCAAAAUUG-UUCAAGUCGGCGUGCACACAAAAGCCAACACUUUGACGGUUCCCCUAUGUGGGGGAUAUCCUGGUGGGAAAA-------------------
...(((((((.(((.......-.....).)).)))))))...........((((..((..(((((((.....))))))).))..))))......------------------- ( -30.20)
>consensus
AAAGUGCAUGGCGCAAAAUUG_UUCAAGUCGGCGUGCACACAAAAGCCAACACUUUGACGGUUCCCCUAUGUGGGGGAUAUCCUGGUGGGAAAA___________________
...(((((((.(((.............).)).)))))))...........((((......(((((((.....))))))).....))))......................... (-16.59 = -18.49 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:50 2006