Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,237,810 – 2,237,909 |
Length | 99 |
Max. P | 0.664387 |
Location | 2,237,810 – 2,237,909 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -18.13 |
Consensus MFE | -14.25 |
Energy contribution | -15.37 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.54 |
Structure conservation index | 0.79 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2237810 99 + 27905053 CUUAAAUCUUUUCCUUUUUUCCUUCCUACGGCUCCAUCGGCCACACCUUGUGCAUUUGCAGGAUGCGAACAGCGU----AUUGCUUUUUGUUUUCCGC-----CUUUG .............................((((.....))))........(((....)))(((.(((((.(((..----...))).)))))..)))..-----..... ( -17.80) >DroEre_CAF1 27087 90 + 1 CUUAAUUCUU-UCCUUUUUC--------UGGCUCCCUCGACCACACCUAGUGCUUUUGCAGGAUGCAAACAGCGU----AUUGCUUUUUGUUUUCUGC-----CUUUG ..........-.........--------(((.((....)))))..............((((((.(((((.(((..----...))).))))).))))))-----..... ( -16.80) >DroYak_CAF1 25819 100 + 1 CUUAAUUCUUUUCCUUUUUC--------UGGCUCCCUCGGCCACACCUAGUGCUUUUGCAGGAUGCAAACAACGUAUGUAUUACUUUUUGUUUUCUGCUGCUACUUUG ....................--------(((((.....))))).....(((((....((((((.(((((.((.(((.....)))))))))).)))))).)).)))... ( -19.80) >consensus CUUAAUUCUUUUCCUUUUUC________UGGCUCCCUCGGCCACACCUAGUGCUUUUGCAGGAUGCAAACAGCGU____AUUGCUUUUUGUUUUCUGC_____CUUUG .............................((((.....))))...............((((((.(((((.((((.......)))).))))).)))))).......... (-14.25 = -15.37 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:08 2006