Locus 6029

Sequence ID 3R_DroMel_CAF1
Location 15,895,046 – 15,895,151
Length 105
Max. P 0.500000
window9835

overview

Window 5

Location 15,895,046 – 15,895,151
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 93.02
Mean single sequence MFE -26.80
Consensus MFE -19.36
Energy contribution -19.03
Covariance contribution -0.33
Combinations/Pair 1.08
Mean z-score -2.68
Structure conservation index 0.72
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15895046 105 - 27905053
CAAAACCAUUCCCAGCAUCGUCUUUCAAAAAAUGUGAAAAAAUGACGAAAAGUCAGCAAAAAUAUGCGCGCGUGUUUGAAAGGGCGGGGGAAAAAACGAAGCUGA
........(((((.((....(((((((((..(((((......((((.....))))(((......))).))))).)))))))))))..)))))............. ( -27.50)
>DroSec_CAF1 2139 104 - 1
GAAAACCCCUCCCAGCAUCGUCUUUCAAAAAAUGGGAAAAAAUGCCGAAAAGUCAGCAAAAAUAUGCGCGCGUUUUCAAAAGGGCGGGGAAA-AAACGAAGCUGA
.....((((.(((.((((..(.(..((.....))..).)..)))).(((((((..(((......)))..)).)))))....))).))))...-............ ( -26.80)
>DroSim_CAF1 2126 105 - 1
GAAAACCCCUCCCAGCAUCGUGUUUCAAAAAAUGGGAAAAAAUGCCGAAAAGUCAGCAAAAAUAUGCGCGCGUGUUCAAAAGGGCGGGGAAAAAAACGAAGCUGA
.....((((.(((.((((....(..((.....))..)....)))).(((..((..(((......)))..))...)))....))).))))................ ( -26.10)
>consensus
GAAAACCCCUCCCAGCAUCGUCUUUCAAAAAAUGGGAAAAAAUGCCGAAAAGUCAGCAAAAAUAUGCGCGCGUGUUCAAAAGGGCGGGGAAAAAAACGAAGCUGA
............((((.((((.((((......(((.(.....).)))....(((......((((((....))))))......)))...))))...)))).)))). (-19.36 = -19.03 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:49 2006