Locus 6028

Sequence ID 3R_DroMel_CAF1
Location 15,894,599 – 15,894,702
Length 103
Max. P 0.999366
window9834

overview

Window 4

Location 15,894,599 – 15,894,702
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 97.07
Mean single sequence MFE -17.16
Consensus MFE -16.48
Energy contribution -16.68
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.96
SVM decision value 3.54
SVM RNA-class probability 0.999366
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15894599 103 + 27905053
ACUUCCUGUUUCUCCAUUCUGAAGCGUUGCACGUUUUUCUUAUUCAAAAGUUAUUGUGCUGCUGUCAGGAAAGUUUCCCUUUUUUCCCCAUCUCCACCUUCUC
..((((((((((........)))))((.(((((.....(((......)))....))))).))....)))))................................ ( -17.40)
>DroSec_CAF1 1677 102 + 1
ACUUCCUGUUUCUCCUUUCUGAAGCGUUGCACGUUUUUCUUAUUCAAAAGUUAUUGUGCUGCUGUCAGGAAAGUUUCCCUUUUU-UCCCAUCUCCACCUUCUC
..((((((((((........)))))((.(((((.....(((......)))....))))).))....))))).............-.................. ( -17.40)
>DroSim_CAF1 1662 102 + 1
ACUUCCUGUUUCUCCUUUCUGAAGCGUUGCACGUUUUUCUUAUUCAAAAGUUAUUGUGCUGCUGUCAGGAAAGUUUCCCUUUUU-CCCCAUCUCCACCUUCUC
..((((((((((........)))))((.(((((.....(((......)))....))))).))....))))).............-.................. ( -17.40)
>DroEre_CAF1 1626 101 + 1
ACUUCCUGUUUCUCCUUUCUGAAGCGUUGCACGUUUUUCUUAUUCAAAAGUUAUUGUGCUGCCGUCAGGAAAGUUUCCCUU-UU-CCCCAUCUCCACCUUUUC
..((((((((((........)))))((.(((((.....(((......)))....))))).))....)))))..........-..-.................. ( -17.00)
>DroYak_CAF1 1588 102 + 1
ACUUCCCGUUUCUCCUUUCUGAAGCGUUGCACGUUUUUCUUAUUCAAAAGUUAUUGUGCUGCCGUCAGGAAAGUUUCCCUUUUU-CCCCAUCUCCACCUUCUC
((((.(((((((........)))))((.(((((.....(((......)))....))))).)).....)).))))..........-.................. ( -16.60)
>consensus
ACUUCCUGUUUCUCCUUUCUGAAGCGUUGCACGUUUUUCUUAUUCAAAAGUUAUUGUGCUGCUGUCAGGAAAGUUUCCCUUUUU_CCCCAUCUCCACCUUCUC
..((((((((((........)))))((.(((((.....(((......)))....))))).))....)))))................................ (-16.48 = -16.68 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:48 2006