Locus 6026

Sequence ID 3R_DroMel_CAF1
Location 15,890,087 – 15,890,184
Length 97
Max. P 0.570746
window9831

overview

Window 1

Location 15,890,087 – 15,890,184
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 95.44
Mean single sequence MFE -19.47
Consensus MFE -17.18
Energy contribution -16.86
Covariance contribution -0.32
Combinations/Pair 1.09
Mean z-score -1.21
Structure conservation index 0.88
SVM decision value 0.07
SVM RNA-class probability 0.570746
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15890087 97 - 27905053
ACAAUGUGGAGAAAAGUUCUUCUUCGGCGGAGGAGGCGAAAGUGCAAAAAGCCAAGUCAGUAAGUAGCAUAGAAUUUUCAACACAAGAAAAGCCACC
....((((..(((((.(((((((((....)))))(((.............))).................)))))))))..))))............ ( -18.32)
>DroSec_CAF1 8131 96 - 1
ACAAUGUGGAGGAAAGUUCUCCUUCGGCGCAGGAGGCGAAAGUGCAAAAAGCCAAGUCAGUAAGUAGCAAAGAAUUUUCAACACAAGAAAAGCCAC-
....((((...(((((((((.(((.(((....(..((....)).).....))))))...((.....))..)))))))))..))))...........- ( -21.80)
>DroSim_CAF1 7737 96 - 1
ACAAUGUGGAGAAAAGUUCUCCUUCGGCGCAGGAGGCGAAAGUGCAAAAAGCCAAGUCAGUAAGUAGCAAAGAAUUUUCAACACAAGAAAAGCCAC-
.......(((((.....)))))...(((((.....((....))((.....))..............))......(((((.......))))))))..- ( -18.90)
>DroEre_CAF1 9459 96 - 1
ACAAUGUGGAGAAAAGUUCUCCUUCGGCGAAGGAAGCGAAAGUGCAAAAAGCCAAGUCAGUAAGUAGCAAAGAAUUUUCAACACAAGAAAAGCCAC-
....((((..(((((.((((.(((.(((.......((....)).......))))))...((.....))..)))))))))..))))...........- ( -19.34)
>DroYak_CAF1 7844 96 - 1
ACAAUGUGAAGAAAAGUUCUCCUUUGGCGAAGGAGGCAAAAGUGCAAAAAGCCAAGUCAGUAAGUAGCAAAGAAUUUUUAACACAAGAAAAGCCAC-
....((((...(((((((((..((((((.......(((....))).....))))))...((.....))..)))))))))..))))...........- ( -19.00)
>consensus
ACAAUGUGGAGAAAAGUUCUCCUUCGGCGAAGGAGGCGAAAGUGCAAAAAGCCAAGUCAGUAAGUAGCAAAGAAUUUUCAACACAAGAAAAGCCAC_
....((((..(((((.((((.(((.(((.......((....)).......))))))...((.....))..)))))))))..))))............ (-17.18 = -16.86 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:45 2006