Locus 6023

Sequence ID 3R_DroMel_CAF1
Location 15,869,377 – 15,869,494
Length 117
Max. P 0.965414
window9825

overview

Window 5

Location 15,869,377 – 15,869,494
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.65
Mean single sequence MFE -24.62
Consensus MFE -19.45
Energy contribution -18.82
Covariance contribution -0.63
Combinations/Pair 1.30
Mean z-score -1.66
Structure conservation index 0.79
SVM decision value 1.58
SVM RNA-class probability 0.965414
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15869377 117 - 27905053
UUAAAUUACUAUAAUAUCG---AUCUAAGAACUCACGGUAUCCAAUUCAUUGACCAGCGCUUUGACAAUGGGGCACAUCAUGGCCGUUCCGGCUGAGUUGGAUAUCCACAAUCCCAUAAA
...................---..............((((((((((((..(((...((.((........)).))...))).(((((...))))))))))))))))).............. ( -27.00)
>DroSec_CAF1 32273 117 - 1
UUAAAUUACUAUAAUAUUG---AUCUAAGAACUCACGGCAUCCAAUUCAUUGACAAGCGCUUUGACAAUAGGGCACAUCAUGGCCGUUCCGGCUGAGUUGGAUAUCCACAAUCCCAAAAA
...................---..............((.(((((((((..(((...((.((........)).))...))).(((((...))))))))))))))..))............. ( -24.00)
>DroSim_CAF1 35518 120 - 1
UUAAAUUACUAAAUUACUUAAUAUCUAAGAACUCACGGUAUCCAAUUCAUUGACAAGCGCUUUGACAAUAGGGCACAUCAUGGCCGUUCCGGCUGAGUUGGAUAUCCACAAUCCCAUAAA
................((((.....)))).......((((((((((((..(((...((.((........)).))...))).(((((...))))))))))))))))).............. ( -27.80)
>DroEre_CAF1 32472 106 - 1
-----------AAAUUAUU---UUCUAACAACUCACGGUAUUCAACUCUGUGAUCAGCGCCUUAACAAUGGGACACAUCAUAGCCGUUCCGGCAGAAUUGGAUAUCCACAAUCCCAUAAA
-----------........---..............(((((((((.((((((((.....(((.......)))....))))).((((...))))))).))))))))).............. ( -21.40)
>DroWil_CAF1 33296 107 - 1
UUUAACUCUU-------UU---GUUU---CCCUUACCGUAUCCAUUUCGUUGAGUACAGCUUUAAUGAUAGGACACAUCAUUGCUGCUCCGGCUGAAUUGGAUAUCCACAGACUAAUGAA
.........(-------(.---.((.---..((....(((((((.(((((((.(..((((...((((((.(....)))))))))))..))))).))).)))))))....))...))..)) ( -23.00)
>DroYak_CAF1 43841 114 - 1
UCGAAUUACUCGAAUUAUU---AUUA---UACUCACGGCAUUCAAUUCUGUGAUCAGCGCCUUAACAAUGGGACACAUCAUAGCCGUUCCGGCAGAGUUGGAUAUCCACAAUCCCAUAAA
((((.....))))......---....---.......((.(((((((((((((((.....(((.......)))....))))).((((...))))))))))))))..))............. ( -24.50)
>consensus
UUAAAUUACUAAAAUAAUU___AUCUAAGAACUCACGGUAUCCAAUUCAUUGACCAGCGCUUUAACAAUAGGACACAUCAUGGCCGUUCCGGCUGAGUUGGAUAUCCACAAUCCCAUAAA
....................................(((((((((((((.(((......(((.......))).....)))..((((...))))))))))))))))).............. (-19.45 = -18.82 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:39 2006