Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,856,538 – 15,856,652 |
Length | 114 |
Max. P | 0.801180 |
Location | 15,856,538 – 15,856,652 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.49 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -26.49 |
Energy contribution | -27.52 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.24 |
Mean z-score | -1.42 |
Structure conservation index | 0.68 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15856538 114 + 27905053 CCACCGAAAGGUCCUCCGCGAUGCUAAGCAAAUCCCCUUCGCCGGCGGCGUUAGCAUUGCUGGCCUCCCGGUCCAGCAUGUCCAUAAUGUGCUGAUGGGAUCGCUGGCAUGUCA ..(((....))).....((.((((((.((..(((((....(((((.((.((((((...)))))))).))))).((((((((.....))))))))..))))).)))))))))).. ( -44.20) >DroVir_CAF1 107486 96 + 1 CGG---------CCUCAG-CCUCUU--------CAUCAUCACCCGCUCCCAGCUGCGUGUCCAUAUCCGUAGACAGCAUGUCCGCAAUAUGCUGAUGCGAUCUCUGGCAAGUCA .((---------(....(-((....--------.......((.(((........))).)).......((((..((((((((.....)))))))).))))......)))..))). ( -23.40) >DroSec_CAF1 19196 114 + 1 CCACCGAAAGGUCCUCCGCGAUGCUAAGCAAAUCCCCUUCGCCGGCGGCAUUAGCAUUGCUGGCCUCCCGGUCCAGCAUGUCCAUAAUGUGCUGAUGGGAUCGCUGGCAUGUCA ..(((....))).....((........))...........(((((((((((((((((((((((((....)).))))))..........)))))))))...))))))))...... ( -43.10) >DroSim_CAF1 22516 114 + 1 CCACCGAAAGGUCCUCCGCGAUGCUAAGCAAAUCCCCUUCGCCGCCGGCAUUAGCAUUGCUGGCCUCCCGGUCCAGCAUGUCCAUAAUGUGCUGAUGGGAUCGCUGGCAUGUCA ..(((....))).....((.((((((.((..(((((....(((...)))((((((((((((((((....)).))))))..........))))))))))))).)))))))))).. ( -42.00) >DroEre_CAF1 19527 114 + 1 CCACCGAAAGGUCCUCCGAGCUGUUCAGCAACUCUCCUUCGCCGGCGGCAUUGGCGUUGCUAGCCUCCCGCACCAACAUGUCCAUAAUGUGUUGAUGGGAUCGCUGGCAGGUCA ..(((....))).....((.((((.((((...........((..(((((......)))))..)).(((((...((((((((.....)))))))).)))))..)))))))).)). ( -41.30) >DroYak_CAF1 30324 114 + 1 CCACCGAAAGGUCCUCCGAGUUGUUCAGCAAUUCUCCUUCGCCGGCGGCAUUGGCGUUGCUAGCCUCCCGGACCAGCAUGUCCAUUAUGUGUUGAUGAGAUCGCUGGCAGGUCA ..(((....))).....((.((((.((((...((((.....((((.(((..((((...)))))))..))))..((((((((.....))))))))..))))..)))))))).)). ( -39.30) >consensus CCACCGAAAGGUCCUCCGCGAUGCUAAGCAAAUCCCCUUCGCCGGCGGCAUUAGCAUUGCUGGCCUCCCGGUCCAGCAUGUCCAUAAUGUGCUGAUGGGAUCGCUGGCAUGUCA ..(((....)))............................(((((((((..((((...)))))))(((((...((((((((.....)))))))).)))))..))))))...... (-26.49 = -27.52 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:37 2006