Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,236,642 – 2,236,748 |
Length | 106 |
Max. P | 0.656637 |
Location | 2,236,642 – 2,236,748 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.39 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -22.04 |
Energy contribution | -22.48 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.63 |
Structure conservation index | 0.77 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2236642 106 + 27905053 GAA-AAACAAAAACAAACUGCGUACAGGCCUUUCAAUAAAUGGCGGCAUGGUCGGUGGAAUGGGUUGAAGAGAGGGUGAAA-AGAGGAGCCCCCUCUGAGGUGUUGGU ...-.........((((((.(...(((.(((((((.....((((......)))).))))).)).))).((((.((((....-......)))).))))).))).))).. ( -23.50) >DroSec_CAF1 25686 105 + 1 GAA-AAACAAAAACAAACUGCGUGCAGGCCUUUCAAUAAAUGGCGGCAUGGGCGGUAGAAUGGGUGGAAGAGAGGGGGGAA-AGAGGAGCC-CCUCGGAGGAGUUGGU ...-...(((...(..(((((((((..(((...........))).))))..)))))...............((((((....-.......))-))))...)...))).. ( -27.20) >DroSim_CAF1 27084 106 + 1 GAA-AAACAAAAACAAACUGCGUGCAGGCCUUUCAAUAAAUGGCGGCAUGGGCGGCAGAAUGGGUGGAAGAGAGGGGGGAA-AGAGGAGCCCCCUCUGAGGAGUUGGU ...-...(((...(...((((((.((.(((..(((.....))).))).)).)).))))............((((((((...-.......))))))))..)...))).. ( -31.20) >DroEre_CAF1 25942 106 + 1 GAA-AAACAAAAACAAACUGCGUGCAGGCCUUUCAAUAAAUGGUGGCAUGGGCGACGGAGUGGGGUGAAAAUAGGGGGCAA-AGAGGAGUCCCCUCUGUGGAGUUGGU ...-...(((..(((..((((((.((.(((..(((.....))).))).)).))).)))..............(((((((..-......))))))).)))....))).. ( -29.00) >DroYak_CAF1 24690 107 + 1 GAAAAAACAAAAACAAACUGCGUGCAGGCCUUUCAAUAAAUGGCAGCAUGGGCGACGGAAUGG-UUGAAAAGAGGGGGCAAGAGGAGAGCUCCCUCUGUGGAGUUUUU ..((((((...(((...((((((.((.(((...........)))....)).))).)))....)-))....(((((((((.........))))))))).....)))))) ( -32.10) >consensus GAA_AAACAAAAACAAACUGCGUGCAGGCCUUUCAAUAAAUGGCGGCAUGGGCGGCGGAAUGGGUUGAAGAGAGGGGGCAA_AGAGGAGCCCCCUCUGAGGAGUUGGU .....(((.....((..((((((.((.(((..(((.....))).))).)).))).)))..))........((((((((...........)))))))).....)))... (-22.04 = -22.48 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:07 2006