Locus 6018

Sequence ID 3R_DroMel_CAF1
Location 15,846,358 – 15,846,459
Length 101
Max. P 0.516141
window9819

overview

Window 9

Location 15,846,358 – 15,846,459
Length 101
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 76.51
Mean single sequence MFE -30.55
Consensus MFE -20.44
Energy contribution -20.50
Covariance contribution 0.06
Combinations/Pair 1.27
Mean z-score -1.06
Structure conservation index 0.67
SVM decision value -0.03
SVM RNA-class probability 0.516141
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15846358 101 - 27905053
CCGAAGCACUGGAGCACGUACUGAUCGCCUGUGCGGUGUACUUGCUAGUAUGCCUGGGCCUCUACAAGCUCACCUUCUGGCUCUCGGGAGCCGGAUCG-GGA----
((((.((((.((..((.....))....)).))))((((..((((.(((...((....))..)))))))..)))).((((((((....)))))))))))-)..---- ( -41.90)
>DroVir_CAF1 97794 105 - 1
CUGAAGCACUGGAGCAUUUACUGAUUGCAUGUGCGGUAUACUUGCUAGUAUGCCUGGGCCUCUACAAGCUAACCUUUUGGCUUUCGGCUUCCGUAAC-UGGCGUGC
.....((((.(((((((...(.....)...))))((((((((....))))))))..((((.....(((((((....)))))))..)))))))((...-..)))))) ( -30.00)
>DroWil_CAF1 10997 89 - 1
CUGAAGCCCUGGAGCAUAUUUUGAUUGCAUGUGCGGUAUACUUGAUAGUAUGCCUGGGCCUAUACAAGCUCACCUUUUGGCUGACAU---------CG--------
....((((..((.((((((.........))))))((((((((....))))))))(((((........)))))))....)))).....---------..-------- ( -26.30)
>DroMoj_CAF1 96373 99 - 1
CCGAAGCACUGGAGCAUAUACUGAUUGCAUGUGCGGUAUACUUUCUAGUAUGCCUAGGCCUAUACAAGUUGACCCUAUGGCUGUCGGUGUC-------AGGCGUGA
((...(((((((.((((((.(.....).))))))((((((((....))))))))..((((..................)))).))))))).-------.))..... ( -29.67)
>DroAna_CAF1 8897 89 - 1
CCGAAGCGCUGGAGCACAUAGUAAUCGCAUGUGCGGUGUACUUGCUAGUAUGCCUGGGCCUCUACAAGCUCACCUUUUGGCUCUCCCG--C---------------
.((.((.((..((((((((.((....))))))))((((..((((.(((...((....))..)))))))..)))).))..)).))..))--.--------------- ( -30.00)
>DroPer_CAF1 104417 89 - 1
CCGAAGCACUGGAGCACGUAGUGAUUGCAUGUGUGGUAUACUUGCUAGUAUGCCUUGGCCUAUACAAGCUCACCUUCUGGCUCUCCGCC-----------------
.....((...(((((.....((((..((.(((((((((((((....)))))))).......))))).))))))......)))))..)).----------------- ( -25.41)
>consensus
CCGAAGCACUGGAGCACAUACUGAUUGCAUGUGCGGUAUACUUGCUAGUAUGCCUGGGCCUAUACAAGCUCACCUUUUGGCUCUCGGC__C_______________
(((((((...((.((((((.........))))))((((((((....))))))))..(((........)))..)).....))).))))................... (-20.44 = -20.50 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:33 2006